Is there a way to skip the error and continue converting?

[wangyiqing50]

Hi,

I am running it on a bam file but the error message told me it could be truncated. I am seeking a way how to skip these errors.
Slight data loss is acceptable.

`[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[E::bgzf_read_block] Invalid BGZF header at offset 295634318
[E::bgzf_read] Read block operation failed with error 6 after 0 of 4 bytes
bamtofastq error: IO Error reading BAM file. Your BAM file may be corrupt

If this error is unexpected, contact support@10xgenomics.com for assistance. Please re-run with --traceback and include stack trace with an error report
see below for more details:

IO Error reading BAM file. Your BAM file may be corrupt
0: anyhow::backtrace::capture::Backtrace::capture
1: bamtofastq::inner
2: bamtofastq::main
3: std::sys_common::backtrace::__rust_begin_short_backtrace
4: _main
`

[lisafournier]

Hi, I am getting the same problem. Did you find a solution to resolve/skip this error ?