refinebio/compose.yml at dev · AlexsLemonade/refinebio · GitHub

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# Local-development services for refinebio.

name: refinebio

# Shared config for the worker app services. Each worker image gets its own
# service so callers can `docker compose run --rm <worker> ...`.
x-worker: &worker
  platform: linux/amd64
  env_file: workers/environments/local
  environment:
    AWS_ACCESS_KEY_ID:
    AWS_SECRET_ACCESS_KEY:
  volumes:
    - ./workers/volume:/home/user/data_store

services:
  postgres:
    image: postgres:17.9
    container_name: drdb
    environment:
      POSTGRES_PASSWORD: mysecretpassword
      PGDATA: /var/lib/postgresql/data/pgdata
    networks:
      # Reachable as `database` from app services (matches the env files'
      # DATABASE_HOST=database) so env files don't need updating.
      default:
        aliases:
          - database
    ports:
      - "5432:5432"
    volumes:
      - ./volumes_postgres:/var/lib/postgresql/data

  elasticsearch:
    image: docker.elastic.co/elasticsearch/elasticsearch:6.5.4
    container_name: dres
    platform: linux/amd64
    environment:
      discovery.type: single-node
      indices.query.bool.max_clause_count: 16384
    ports:
      - "9200:9200"
      - "9300:9300"

  api:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_api_local:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: api/environments/local
    # dr_api_local has empty ENTRYPOINT and no CMD — needs an explicit
    # command for `compose up` to work.
    command: python3 manage.py runserver 0.0.0.0:8000
    ports:
      - "8000:8000"

  # One-shot service used by `rbio common:*` (makemigrations / migrate / etc.).
  # Mounts data_refinery_common back to the host so generated migration files
  # land in the working tree.
  migrations:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_migrations:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: common/environments/local
    volumes:
      - ./common/data_refinery_common:/home/user/data_refinery_common

  # Per-subproject test services used by `rbio test:*`. Mirror the runtime
  # services but with the test env_file so DJANGO_SETTINGS / DB names match
  # what the test suites expect.
  test_api:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_api_local:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: api/environments/test
    volumes:
      - ./test_volume:/home/user/data_store

  test_common:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_common_tests:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: common/environments/test
    volumes:
      - ./test_volume:/home/user/data_store

  test_foreman:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_foreman:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: foreman/environments/test
    volumes:
      - ./test_volume:/home/user/data_store

  foreman:
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_foreman:${SYSTEM_VERSION:-local}
    platform: linux/amd64
    env_file: foreman/environments/local
    environment:
      AWS_ACCESS_KEY_ID:
      AWS_SECRET_ACCESS_KEY:
    volumes:
      - ./foreman/volume:/home/user/data_store
      - /tmp:/tmp

  smasher:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_smasher:${SYSTEM_VERSION:-local}

  salmon:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_salmon:${SYSTEM_VERSION:-local}

  no_op:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_no_op:${SYSTEM_VERSION:-local}

  illumina:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_illumina:${SYSTEM_VERSION:-local}

  downloaders:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_downloaders:${SYSTEM_VERSION:-local}

  transcriptome:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_transcriptome:${SYSTEM_VERSION:-local}

  compendia:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_compendia:${SYSTEM_VERSION:-local}

  affymetrix:
    <<: *worker
    image: ${DOCKERHUB_REPO:-ccdlstaging}/dr_affymetrix:${SYSTEM_VERSION:-local}