fix diffbind report

[kelly-sovacool]

• show the code, with option to fold it
• rename group1/2 with actual contrast names
• revisit and make sure gem & sicer are correctly categorized

  CHAMPAGNE/assets/diffbind_report.Rmd

  Lines 72 to 84 in 8243010

  	if (grepl("narrow", samples$samples$Peaks[1])) {
  	summits <- TRUE
  	print("Narrow peak calling tool.")
  	print("Differential peaks are 250bp upstream and downstream of the summits.")
  	} else if (grepl("broad", samples$samples$Peaks[1])) {
  	summits <- FALSE
  	print("Broad peak calling tool.")
  	print("Differential peaks are consensus peaks.")
  	} else {
  	summits <- FALSE
  	print("Indeterminate peak calling tool.")
  	print("Differential peaks are consensus peaks.")
  	}

• rename to MA plot (not MANorm)

  CHAMPAGNE/assets/diffbind_report.Rmd

  Line 138 in 8243010

  ### MANorm