Description of the bug
Files downloaded from SRA archive were imported as unpacked .fastq files. CHAMPAGNE failed at samplesheet check. Log indicates failure at
|
if not fastq.endswith(".fastq.gz") and not fastq.endswith(".fq.gz"): |
Appears to require both file as fastq.gz format and matching format name in samplesheet.csv
Command used and terminal output
champagne run --output . --input samplesheet.csv
Relevant files
No response
System information
No response
Description of the bug
Files downloaded from SRA archive were imported as unpacked
.fastqfiles. CHAMPAGNE failed at samplesheet check. Log indicates failure atCHAMPAGNE/bin/check_samplesheet.py
Line 109 in 0031bfd
Appears to require both file as
fastq.gzformat and matching format name insamplesheet.csvCommand used and terminal output
champagne run --output . --input samplesheet.csvRelevant files
No response
System information
No response