diff --git a/assets/samplesheet_test.csv b/assets/samplesheet_test.csv
index 0244f29c..d303f4fc 100644
--- a/assets/samplesheet_test.csv
+++ b/assets/samplesheet_test.csv
@@ -3,5 +3,5 @@ SPT5_T0,1,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testda
SPT5_T0,2,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822154_1.fastq.gz,,SPT5,SPT5_INPUT
SPT5_T15,1,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822157_2.fastq.gz,SPT5,SPT5_INPUT
SPT5_T15,2,https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822158_1.fastq.gz,,SPT5,SPT5_INPUT
-SPT5_INPUT,1,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R2.fastq.gz,,
-SPT5_INPUT,2,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R2.fastq.gz,,
+SPT5_INPUT,1,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204809_Spt5-ChIP_Input1_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,,,
+SPT5_INPUT,2,https://raw.githubusercontent.com/nf-core/test-datasets/chipseq/testdata/SRR5204810_Spt5-ChIP_Input2_SacCer_ChIP-Seq_ss100k_R1.fastq.gz,,,
diff --git a/docs/devs/contributors.md b/docs/devs/contributors.md
index 323992cc..f13a17eb 100644
--- a/docs/devs/contributors.md
+++ b/docs/devs/contributors.md
@@ -3,6 +3,6 @@
| | | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 
Kelly Sovacool, PhD | ![github-actions[bot]](https://avatars.githubusercontent.com/in/15368?v=4)
github-actions[bot] | 
Samantha |
-| 
Vishal Koparde, PhD |
+| 
Vishal Koparde, PhD | 
Copilot |
View the [contributors graph on GitHub](https://github.com/CCBR/CHAMPAGNE/graphs/contributors) for more details.
diff --git a/main.nf b/main.nf
index 9a1b7b98..9801de18 100644
--- a/main.nf
+++ b/main.nf
@@ -305,7 +305,8 @@ workflow {
deeptools_stats = ch_deeptools_stats
multiqc_report = multiqc_report
multiqc_inputs = ch_multiqc
- align_bam = DEDUPLICATE.out.bam
+ dedup_bam = DEDUPLICATE.out.bam
+ dedup_tagalign = DEDUPLICATE.out.tag_align
peaks = ch_peaks
peaks_consensus = ch_peaks_consensus
annot = ch_annot
@@ -344,9 +345,12 @@ output {
multiqc_inputs {
path { inputs -> "qc/multiqc/inputs/" }
}
- align_bam {
+ dedup_bam {
path { bam -> "align/bam/" }
}
+ dedup_tagalign {
+ path { tagalign -> "align/tagalign/" }
+ }
peaks {
path { meta, peak, tool -> "peaks/${meta.tool}/replicates/"}
}