- Changed the backend from
arrowtoRSQLightto increase reliability and improve performance. Some changes to the interface were necessary to implement this and users should read the readme for updated instructions.
- Fixed bug where
create_fish_dbfailed when a prior cache was present without a revision file. - Adding
download_methodparameter tocreate_fish_dbto help users download files given their specific limitations
- Add
pkgdownwebsite - Implement EDI data package version checking and specification withn
create_fish_db - Remove dependency on
duckdband add dependency toarrow>= v8.0.0 - Fix
remove_unknown_lengthsto ignore 0-counts when finding samples to remove - Change
convert_lengthsfunction so it no longer collects the full dataset - Add tests to mirror what was previously tested in package
LTMRdata - Reconfigure internals so internal functions can now read/write database from a specificed cache folder
- Added a
NEWS.mdfile to track changes to the package.
- Initialize package and database from EDI data publication