Apiserver container won't start anymore

[samuvb]

Current Behavior

[Config] Application: Dependency-Track
[Config] Version: 4.11.3
[Config] Built-on: 2024-06-03T09:33:35Z

We currently run dependency track without a dedicated db and all projects and data is stored in the container itself. I had to restart the container (not down it) just a restart and now it won't boot anymore and be stuck on the following:

2024-08-27 14:20:28,094 INFO [PersistenceInitializer] Shutting down database service
2024-08-27 14:20:29,248 INFO [EmbeddedJettyServer] alpine-executable-war v2.2.5 (c3a1a709-acdc-4ca7-96dd-5eaab858ee32) built on: 2024-02-29T20:30:01Z
2024-08-27 14:20:31,117 INFO [Config] --------------------------------------------------------------------------------
2024-08-27 14:20:31,119 INFO [Config] OS Name: Linux
2024-08-27 14:20:31,119 INFO [Config] OS Version: 5.15.0-1057-azure
2024-08-27 14:20:31,120 INFO [Config] OS Arch: amd64
2024-08-27 14:20:31,120 INFO [Config] CPU Cores: 2
2024-08-27 14:20:31,121 INFO [Config] Max Memory: 6.2 GB (6,660,554,752.0 bytes)
2024-08-27 14:20:31,122 INFO [Config] Java Vendor: Eclipse Adoptium
2024-08-27 14:20:31,123 INFO [Config] Java Version: 21.0.3+9-LTS
2024-08-27 14:20:31,123 INFO [Config] Java Home: /opt/java/openjdk
2024-08-27 14:20:31,124 INFO [Config] Java Temp: /tmp
2024-08-27 14:20:31,124 INFO [Config] User: dtrack
2024-08-27 14:20:31,124 INFO [Config] User Home: /data/
2024-08-27 14:20:31,124 INFO [Config] --------------------------------------------------------------------------------
2024-08-27 14:20:31,125 INFO [Config] Initializing Configuration
2024-08-27 14:20:31,125 INFO [Config] System property alpine.application.properties not specified
2024-08-27 14:20:31,125 INFO [Config] Loading application.properties from classpath
2024-08-27 14:20:31,129 INFO [Config] --------------------------------------------------------------------------------
2024-08-27 14:20:31,129 INFO [Config] Application: Dependency-Track
2024-08-27 14:20:31,130 INFO [Config] Version: 4.11.3
2024-08-27 14:20:31,130 INFO [Config] Built-on: 2024-06-03T09:33:35Z
2024-08-27 14:20:31,130 INFO [Config] --------------------------------------------------------------------------------
2024-08-27 14:20:31,130 INFO [Config] Framework: Alpine
2024-08-27 14:20:31,131 INFO [Config] Version : 2.2.5
2024-08-27 14:20:31,131 INFO [Config] Built-on: 2024-02-29T20:30:01Z
2024-08-27 14:20:31,131 INFO [Config] --------------------------------------------------------------------------------
2024-08-27 14:20:31,192 INFO [RequirementsVerifier] Initializing requirements verifier
2024-08-27 14:20:31,192 INFO [UpgradeInitializer] Initializing upgrade framework

or

2024-08-27 14:18:51,716 ERROR [Schema] An exception was thrown while adding/validating class(es) : The database has been closed [90098-224]
The database has been closed [90098-224]
org.datanucleus.exceptions.NucleusDataStoreException: The database has been closed [90098-224]
at org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:477)
at org.datanucleus.store.rdbms.AbstractSchemaTransaction.getCurrentConnection(AbstractSchemaTransaction.java:86)
at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.performTablesValidation(RDBMSStoreManager.java:3553)
at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.run(RDBMSStoreManager.java:3080)
at org.datanucleus.store.rdbms.AbstractSchemaTransaction.execute(AbstractSchemaTransaction.java:118)
at org.datanucleus.store.rdbms.RDBMSStoreManager.createSchemaForClasses(RDBMSStoreManager.java:3922)
at org.datanucleus.store.schema.SchemaTool.createSchemaForClasses(SchemaTool.java:507)
at org.datanucleus.PersistenceNucleusContextImpl.initialiseSchema(PersistenceNucleusContextImpl.java:825)

When restarting.
We are in the process of setting up a DB but at the moment we can't lose this data neither, I found post #3665 which talks about deleting the volume for the DB but I don't wish to do this, is there any solution to this ?

Steps to Reproduce

1. How no DB but store it in the container.
2. restart container docker restart apiserver

Expected Behavior

starting without an issue.

Dependency-Track Version

4.11.3

Dependency-Track Distribution

Container Image

Database Server

N/A

Database Server Version

No response

Browser

Microsoft Edge

Checklist

• I have read and understand the contributing guidelines
• I have checked the existing issues for whether this defect was already reported

[samuvb]

I've pulled out all content from the data/.dependency-track folder onto the local machine and created a bind volume to see if my projects would reappear but its all gone so also this didn't help.

[userdehghani]

same problem:

2024-09-01 12:44:55,871 INFO [RequirementsVerifier] Initializing requirements verifier
2024-09-01 12:44:55,872 INFO [UpgradeInitializer] Initializing upgrade framework

and

2024-09-01 12:30:26,702 ERROR [HikariPool] transactional - Error thrown while acquiring connection from data source
org.h2.jdbc.JdbcSQLNonTransientConnectionException: The database has been closed [90098-224]

[userdehghani]

#3160 (comment)

@nscuro - how can we determine the h2 database version?