Add dcmdjpeg, setup pixi #14
Workflow file for this run
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| name: Build | |
| on: | |
| push: | |
| branches: [ main ] | |
| tags: | |
| - "v?[0-9]+.[0-9]+.[0-9]+*" | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| name: Build | |
| runs-on: ubuntu-24.04 | |
| env: | |
| PIXI_COLOR: always | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: Install micromamba | |
| uses: mamba-org/setup-micromamba@d7c9bd84e824b79d2af72a2d4196c7f4300d3476 #v3.0.0 | |
| with: | |
| cache-downloads: true | |
| - name: Install pixi | |
| uses: prefix-dev/setup-pixi@a0af7a228712d6121d37aba47adf55c1332c9c2e # v0.9.4 | |
| with: | |
| pixi-version: v0.67.2 | |
| run-install: false | |
| - name: Set version | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| run: | | |
| ref_name='${{ github.ref_name }}' | |
| version_number="${ref_name:1}" | |
| pixi project version set "$version_number" | |
| - name: Docker meta | |
| id: meta | |
| uses: docker/metadata-action@v6 | |
| with: | |
| images: | | |
| docker.io/fnndsc/pl-dcm2niix | |
| ghcr.io/fnndsc/pl-dcm2niix | |
| tags: | | |
| type=pep440,pattern={{version}} | |
| type=pep440,pattern={{major}}.{{minor}} | |
| type=raw,value=latest,enable={{is_default_branch}} | |
| # pixi and micromamba don't have ppc64le images available, so to build | |
| # images for ppc64le, we create conda environments using micromamba | |
| # which are then copied into the container images. This also happens | |
| # to be more efficient than running a package manager during docker | |
| # build using QEMU. | |
| # See also: https://github.com/Quantco/pixi-pack/issues/84 | |
| - name: Export conda-explicit-spec | |
| run: pixi project export conda-explicit-spec --frozen --ignore-pypi-errors conda-specs | |
| - name: Create env for linux/amd64 | |
| run: micromamba create --platform linux-64 --relocate-prefix /opt/conda-env -f conda-specs/prod_linux-64_conda_spec.txt -p ./envs/linux/amd64 | |
| - name: Create env for linux/arm64 | |
| run: micromamba create --platform linux-aarch64 --relocate-prefix /opt/conda-env -f conda-specs/prod_linux-aarch64_conda_spec.txt -p ./envs/linux/arm64 | |
| - name: Create env for linux/ppc64le | |
| run: micromamba create --platform linux-ppc64le --relocate-prefix /opt/conda-env -f conda-specs/prod_linux-ppc64le_conda_spec.txt -p ./envs/linux/ppc64le | |
| - name: Build wheel | |
| run: pixi run -e build build | |
| - uses: docker/setup-qemu-action@v4 | |
| - uses: docker/setup-buildx-action@v4 | |
| - name: Login to DockerHub | |
| id: login-dockerhub | |
| if: github.event_name == 'push' | |
| uses: docker/login-action@v4 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Login to GitHub Container Registry | |
| id: login-ghcr | |
| if: github.event_name == 'push' | |
| uses: docker/login-action@v4 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v7 | |
| with: | |
| push: ${{ steps.login-dockerhub.outcome == 'success' && steps.login-ghcr.outcome == 'success' }} | |
| context: . | |
| file: ./prod.Dockerfile | |
| platforms: linux/amd64,linux/arm64,linux/ppc64le | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| cache-from: type=gha | |
| cache-to: type=gha,mode=max | |
| - name: Upload ChRIS Plugin | |
| id: upload | |
| if: github.ref_type == 'tag' | |
| uses: FNNDSC/upload-chris-plugin@v1 | |
| with: | |
| dock_image: ${{ steps.info.outputs.local_tag }} | |
| username: ${{ secrets.CHRISPROJECT_USERNAME }} | |
| password: ${{ secrets.CHRISPROJECT_PASSWORD }} | |
| chris_url: https://cube.chrisproject.org/api/v1/ | |
| compute_names: NERC | |
| - name: Update DockerHub description | |
| if: steps.upload.outcome == 'success' | |
| uses: peter-evans/dockerhub-description@1b9a80c056b620d92cedb9d9b5a223409c68ddfa #v5.0.0 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| short-description: ${{ steps.upload.outputs.title }} | |
| readme-filepath: ./README.md |