Run precommit

Author: bobleesj

.coveragerc

@@ -1,5 +1,5 @@
 [run]
-source = 
+source =
     diffpy/snmf/
 [report]
 omit =

.flake8

@@ -8,4 +8,4 @@ exclude =
 max-line-length = 115
 # Ignore some style 'errors' produced while formatting by 'black'
 # https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#labels-why-pycodestyle-warnings
-extend-ignore = E203
+extend-ignore = E203

.pre-commit-config.yaml

@@ -0,0 +1,43 @@
+default_language_version:
+    python: python3
+ci:
+    autofix_commit_msg: |
+        [pre-commit.ci] auto fixes from pre-commit hooks
+    autofix_prs: true
+    autoupdate_branch: 'pre-commit-autoupdate'
+    autoupdate_commit_msg: '[pre-commit.ci] pre-commit autoupdate'
+    autoupdate_schedule: monthly
+    skip: [no-commit-to-branch]
+    submodules: false
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+        exclude: '\.(rst|txt)$'
+  - repo: https://github.com/psf/black
+    rev: 24.4.2
+    hooks:
+      - id: black
+  - repo: https://github.com/pycqa/flake8
+    rev: 7.0.0
+    hooks:
+      - id: flake8
+  - repo: https://github.com/pycqa/isort
+    rev: 5.13.2
+    hooks:
+      - id: isort
+        args: ["--profile", "black"]
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.7.1
+    hooks:
+      - id: nbstripout
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: no-commit-to-branch
+        name: Prevent Commit to Main Branch
+        args: ["--branch", "main"]
+        stages: [pre-commit]

CHANGELOG.rst

@@ -3,4 +3,3 @@
 ===========
 
 .. current developments
-

doc/source/conf.py

@@ -6,12 +6,13 @@
 
 # -- Path setup --------------------------------------------------------------
 
+import os
+
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
 import sys
-import os
 
 sys.path.insert(0, os.path.abspath("../.."))
 
@@ -48,7 +49,7 @@
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ["_templates"]
 
-from jinja2 import Template, Environment, FileSystemLoader
+from jinja2 import Environment, FileSystemLoader, Template
 
 source_suffix = ".rst"
 

doc/source/release.rst

@@ -1,4 +1,3 @@
 .. index:: release notes
 
 .. include:: /../../CHANGELOG.rst
-

requirements/docs.txt

@@ -1,4 +1,3 @@
 make
 sphinx_rtd_theme
 m2r
-

run_tests.py

@@ -1,6 +1,7 @@
 #!/usr/bin/env python
 
 import sys
+
 import pytest
 
 if __name__ == "__main__":

setup.py

@@ -8,8 +8,8 @@
 """
 
 import os
-from setuptools import setup, find_packages
 
+from setuptools import find_packages, setup
 
 MYDIR = os.path.dirname(os.path.abspath(__file__))