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Saved GFF doesn't have a ##sequence-region directive #3679

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scottcain opened this issue May 4, 2023 · 3 comments
Closed

Saved GFF doesn't have a ##sequence-region directive #3679

scottcain opened this issue May 4, 2023 · 3 comments
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@scottcain
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Describe the bug

When using the "save track data" option, the generated GFF does not have the ##sequence-region directive. While I don't consider this a huge deal, it would be better to have it.

To Reproduce

On WormBase's staging site, see https://staging.wormbase.org/tools/genome/jbrowse2/?session=share-TtNzOW2aJV&password=pc2f1 and select "save track data" from the track menu. Observe that there is no ##sequence-region line on the top line.

Expected behavior

A line with ##sequence-region should be at the top of the GFF3 output.

Screenshots

Version:

2.4.2 from the save_track_data branch

Additional context

@scottcain scottcain added the bug Something isn't working label May 4, 2023
@cmdcolin
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cmdcolin commented May 4, 2023

can you comment to add these issues to #3439 (best for me to keep track of them there)

@scottcain
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Yep, will do.

@cmdcolin
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this issue is tracked in the WIP pr, can close for now while its being worked on there

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