CollectionIdentifiers.yaml

USI_collection_identifiers:
  PXD_identifier:
    short_name: PXD identifier
    full_name: ProteomeXchange identifier
    pattern: PXDnnnnnn
    regular_expression: PXD\d{6}
    identifers_org_prefix: px
    example: PXD017269
    primary_json_resolver: http://proteomecentral.proteomexchange.org/api/proxi/v0.1/datasets/$id
    primary_xml_resolver: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$id&outputMode=XML
    primary_html_resolver: http://proteomecentral.proteomexchange.org/dataset/$id
  RPXD_identifier:
    short_name: RPXD identifier
    full_name: ProteomeXchange reanalysis identifier
    pattern: RPXDnnnnnn
    regular_expression: RPXD\d{6}
    identifers_org_prefix: px
    example: RPXD017269
    primary_json_resolver: http://proteomecentral.proteomexchange.org/api/proxi/v0.1/datasets/$id
    primary_xml_resolver: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=$id&outputMode=XML
    primary_html_resolver: http://proteomecentral.proteomexchange.org/dataset/$id
  PXL_identifier:
    short_name: PXL identifier
    full_name: ProteomeXchange spectrum library identifier
    pattern: PXLnnnnnn
    regular_expression: PXL\d{6}
    identifers_org_prefix: px
    example: PXL000001
  Collection_placeholder:
    short_name: Collection placeholder
    full_name: USI collection identifier placeholder
    pattern: USI000000
    regular_expression: USI000000
    identifers_org_prefix: null
    example: USI000000
  MSV_identifier:
    short_name: MSV identifier
    full_name: MassIVE dataset identifier
    pattern: MSVnnnnnnnnn
    regular_expression: MSV\d{9}
    identifers_org_prefix: null
    example: MSV000078556