requirements-dev.txt

sphinx
recommonmark
sphinx-autobuild
ipykernel
nbsphinx
pylint
autopep8
pytest
pytest-cov
pytest-xdist
pytest-sugar
pytest-clarity; python_version >= '3.6'
tox
coveralls
pluggy<1,>=0.12.0
docstr-coverage
bioservices==1.10.2
tqdm
requests
# git+https://github.com/achillesrasquinha/bpyutils@develop#egg=bpyutils
git+https://github.com/achillesrasquinha/deeply@develop#egg=deeply
git+https://github.com/achillesrasquinha/cobrapy@custom#egg=cobra
wandb
# pydot
# pygraphviz
dask[complete]
dask-ml[complete]
bokeh
scikit-learn
pipenv
jedi<0.18
ipython
bumpversion
vulture
safety
pre-commit
twine

jupyter

Flask