Remove freshen-package-status (all steps complete)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Author: kdw503

.claude/freshen-package-status

@@ -31,7 +31,7 @@ AxisArrays = "0.3, 0.4"
 CoordinateTransformations = "0.5, 0.6"
 Distributed = "1"
 DualNumbers = "0.6"
-ExplicitImports = "1"
+ExplicitImports = "1.9"
 FileIO = "1"
 ForwardDiff = "0.10, 1"
 HDF5 = "0.14, 0.15, 0.16, 0.17"
@@ -45,14 +45,14 @@ LinearAlgebra = "1"
 OffsetArrays = "0.10, 0.11, 1"
 Pkg = "1"
 ProgressMeter = "1"
-RegisterUtilities = "0.1"
+RegisterUtilities = "0.1, 1"
 Requires = "0.5, 1"
 Rotations = "0.9, 0.10, 0.11, 0.12, 0.13, 1"
 SharedArrays = "1"
 StaticArrays = "0.10, 0.11, 0.12, 1"
 Statistics = "1"
 Test = "1"
-julia = "1.6"
+julia = "1.10"
 
 [extras]
 Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"

Project.toml

@@ -1,6 +1,8 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+ImageAxes = "2803e5a7-5153-5ecf-9a86-9b4c37f5f5ac"
 ImageMagick = "6218d12a-5da1-5696-b52f-db25d2ecc6d1"
+RegisterDeformation = "c19381b7-cf49-59d7-881c-50dfbd227eaf"
 TestImages = "5e47fb64-e119-507b-a336-dd2b206d9990"
 
 [compat]

docs/Project.toml

@@ -1,5 +1,6 @@
 using Documenter
 using RegisterDeformation
+using ImageAxes
 
 makedocs(
     sitename = "RegisterDeformation",

docs/make.jl

@@ -1,11 +1,18 @@
 # API summary
 
+## Overview
+
+```@docs
+RegisterDeformation
+```
+
 ## Types
 
 ```@docs
 AbstractDeformation
 GridDeformation
 NodeIterator
+TransformedArray
 WarpedArray
 ```
 
@@ -33,6 +40,7 @@ extrapolate!(::GridDeformation)
 warp
 warp!
 translate
+ImageAxes.getindex!
 ```
 
 ## Composing deformations
@@ -44,6 +52,19 @@ image with `ϕ1` and then warping the result with `ϕ2`.
 compose
 ```
 
+## Affine transforms
+
+```@docs
+tformeye
+tformtranslate
+tformrotate
+rotation2
+rotation3
+rotationparameters
+transform
+transform!
+```
+
 ## Temporal manipulations
 
 ```@docs
@@ -64,4 +85,7 @@ warpgrid
 ```@docs
 eachnode
 centeraxes
+RegisterDeformation.arraysize
+vecindex
+vecgradient!
 ```

docs/src/api.md

@@ -8,7 +8,7 @@ is an `AbstractDeformation`. Indexing is evaluated on demand.
 `A` can be any array; it is automatically wrapped in an extrapolation object
 so that out-of-bounds accesses return `NaN` rather than throwing an error.
 
-See also [`warp`](@ref), [`warp!`](@ref), [`getindex!`](@ref).
+See also [`warp`](@ref), [`warp!`](@ref), [`ImageAxes.getindex!`](@ref).
 """
 struct WarpedArray{T, N, A <: Extrapolatable, D <: AbstractDeformation} <: AbstractArray{T, N}
     data::A

src/warpedarray.jl

@@ -2,6 +2,7 @@
 using RegisterDeformation
 using RegisterDeformation: arraysize
 using CoordinateTransformations, Interpolations, ImageCore, ForwardDiff
+using Rotations: rotation_angle
 using StaticArrays, LinearAlgebra, Distributed, Statistics
 using AxisArrays: AxisArray
 using OffsetArrays