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clean.xml
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<?xml version="1.0" encoding="UTF-8"?>
<catalog name="NOAA IOOS Testbed THREDDS Server"
xmlns="http://www.unidata.ucar.edu/namespaces/thredds/InvCatalog/v1.0"
xmlns:xlink="http://www.w3.org/1999/xlink">
<service name="all" base="" serviceType="compound">
<service name="odap" serviceType="OpenDAP" base="/thredds/dodsC/"/>
<service name="wcs" serviceType="WCS" base="/thredds/wcs/"/>
<service name="wms" serviceType="WMS" base="/thredds/wms/"/>
<service name="ncss" serviceType="NetcdfSubset" base="/thredds/ncss/"/>
<service name="ncml" serviceType="NCML" base="/thredds/ncml/"/>
<service name="uddc" serviceType="UDDC" base="/thredds/uddc/"/>
<service name="iso" serviceType="ISO" base="/thredds/iso/"/>
</service>
<service name="agg" base="" serviceType="compound">
<service name="odap" serviceType="OpenDAP" base="/thredds/dodsC/"/>
<service name="wcs" serviceType="WCS" base="/thredds/wcs/"/>
<service name="wms" serviceType="WMS" base="/thredds/wms/"/>
<service name="ncss" serviceType="NetcdfSubset" base="/thredds/ncss/"/>
<service name="ncml" serviceType="NCML" base="/thredds/ncml/"/>
<service name="uddc" serviceType="UDDC" base="/thredds/uddc/"/>
<service name="iso" serviceType="ISO" base="/thredds/iso/"/>
</service>
<dataset name="Estuarine Hypoxia">
<dataset name="CH3D - Synoptic - Agg" ID="estuarine_hypoxia/ch3d/agg" urlPath="estuarine_hypoxia/ch3d/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"> round time to nearest
hour (it was 1.25 minutes off due to insufficient data <aggregation type="union">
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Estuarine_Hypoxia/usace/ch3d/synoptic/ch3d_agg_rounded_time.nc">
<variable name="time">
<attribute name="units" value="hours since 1985-01-01"/>
</variable>
</netcdf>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="ch3d" />
<attribute name="title" value="CH3D (USACE)" />
<attribute name="id" value="eh.usace.ch3d.synoptic" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay application of CH3D (Curvilinear Hydrodynamics in 3-Dimensions)" />
<attribute name="creator_name" value="Lewis Linker" />
<attribute name="creator_email" value="" />
<attribute name="creator_url" value="http://www.chesapeakebay.net" />
<attribute name="cdm_data_type" value="Grid" />
<remove type="variable" name="time"/>
<variable name="level">
<values> -28.1940 -26.6700 -25.1460 -23.6220 -22.0980 -20.5740 -19.0500 -17.5260 -16.0020
-14.4780 -12.9540 -11.4300 -9.9060 -8.3820 -6.8580 -5.3340 -3.8100 -2.2860 -0.7620 </values>
<attribute name="positive" value="up"/>
</variable>
<variable name="u">
<attribute name="wms-layer" value="ch3d/sea_water_velocity" />
<attribute name="standard_name" value="eastward_sea_water_velocity" />
<attribute name="coordinates" value="level lat lon" />
</variable>
<variable name="v">
<attribute name="wms-layer" value="ch3d/sea_water_velocity" />
<attribute name="standard_name" value="northward_sea_water_velocity" />
<attribute name="coordinates" value="level lat lon" />
</variable>
<variable name="salinity">
<attribute name="wms-layer" value="ch3d/salinity" />
<attribute name="standard_name" value="sea_water_salinity" />
<attribute name="coordinates" value="level lat lon" />
</variable>
<variable name="temperature">
<attribute name="wms-layer" value="ch3d/temperature" />
<attribute name="standard_name" value="sea_water_temperature" />
<attribute name="coordinates" value="level lat lon" />
</variable>
<variable name="wave_period">
<attribute name="wms-layer" value="ch3d/wave_period" />
<attribute name="standard_name" value="sea_surface_wind_wave_period" />
</variable>
<variable name="wave_height">
<attribute name="wms-layer" value="ch3d/wave_height" />
<attribute name="standard_name" value="sea_surface_wind_wave_significant_height" />
</variable>
<aggregation dimName="time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/usace/ch3d/synoptic/" regExp=".*CH3D[0-9]{4}\.nc$"
subdirs="false"/>
</aggregation>
</netcdf>
</aggregation>
</netcdf>
</dataset>
<dataset name="CH3D-ICM - 2004_and_2005" ID="estuarine_hypoxia/ch3d-icm/2004_and_2005" urlPath="estuarine_hypoxia/ch3d-icm/2004_and_2005.nc">
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="ch3d_icm_2004_and_2005" />
<attribute name="title" value="CH3D-ICM (USACE)" />
<attribute name="id" value="eh.usace.ch3d-icm.2004_and_2005" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay application of CH3D-ICM" />
<attribute name="creator_name" value="Ping Wang and Aaron Bever" />
<attribute name="creator_email" value="[email protected] and [email protected]" />
<attribute name="creator_url" value="http://www.chesapeakebay.net" />
<attribute name="cdm_data_type" value="Grid" />
<attribute name="history" value="ASA rewrite into NetCDF: 2011-03-01" />
<variable name="level">
<values> -28.1940 -26.6700 -25.1460 -23.6220 -22.0980 -20.5740 -19.0500 -17.5260 -16.0020
-14.4780 -12.9540 -11.4300 -9.9060 -8.3820 -6.8580 -5.3340 -3.8100 -2.2860 -0.7620 </values>
<attribute name="positive" value="up"/>
</variable>
<variable name="do">
<attribute name="wms-layer" value="ch3d_icm_2004_and_2005/do" />
<attribute name="standard_name" value="mass_concentration_of_dissolved_oxygen_in_sea_water" />
<attribute name="coordinates" value="level lon lat" />
</variable>
<variable name="do_bottom">
<attribute name="wms-layer" value="ch3d_icm_2004_and_2005/do_bottom" />
<attribute name="standard_name" value="mass_concentration_of_dissolved_oxygen_in_sea_water" />
</variable>
<aggregation dimName="time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/usace/ch3d-icm/2004_and_2005/netcdf/" suffix=".nc" subdirs="false"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="CBOFS2 - Synoptic - Agg" ID="estuarine_hypoxia/cbofs2/agg"
urlPath="estuarine_hypoxia/cbofs2/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="cbofs2" />
<attribute name="title" value="CBOFS2 (NOAA) - ROMS-3.0" />
<attribute name="id" value="eh.noaa.cbofs2.synoptic" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Operational Forecast System - 2" />
<attribute name="creator_name" value="Lyon Lanerolle" />
<attribute name="creator_email" value="" />
<attribute name="creator_url" value="http://tidesandcurrents.noaa.gov/ofs/cbofs/cbofs.html" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="u">
<attribute name="standard_name" value="eastward_sea_water_velocity"/>
<attribute name="wms-layer" value="cbofs2/sea_water_velocity" />
</variable>
<variable name="v">
<attribute name="standard_name" value="northward_sea_water_velocity"/>
<attribute name="wms-layer" value="cbofs2/sea_water_velocity" />
</variable>
<variable name="temp">
<attribute name="wms-layer" value="cbofs2/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
<!--attribute name="missing_value" type="float" value="0.0"/-->
</variable>
<variable name="salt">
<attribute name="wms-layer" value="cbofs2/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/noaa/cbofs2/synoptic/Output_Avg/" suffix=".nc"
subdirs="false"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="CBOFS2-1TDO - 2004_only - Agg" ID="estuarine_hypoxia/cbofs2-1tdo/agg"
urlPath="estuarine_hypoxia/cbofs2-1tdo/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="cbofs2-1tdo" />
<attribute name="title" value="CBOFS2-1TDO (NOAA) - ROMS-3.0" />
<attribute name="id" value="eh.noaa.cbofs2-1tdo.2004_only" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Operational Forecast System - 2 with 1-term DO" />
<attribute name="creator_name" value="Lyon Lanerolle" />
<attribute name="creator_email" value="" />
<attribute name="creator_url" value="http://tidesandcurrents.noaa.gov/ofs/cbofs/cbofs.html" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="u">
<attribute name="standard_name" value="eastward_sea_water_velocity"/>
<attribute name="wms-layer" value="cbofs2-1tdo/sea_water_velocity" />
</variable>
<variable name="v">
<attribute name="standard_name" value="northward_sea_water_velocity"/>
<attribute name="wms-layer" value="cbofs2-1tdo/sea_water_velocity" />
</variable>
<variable name="temp">
<attribute name="wms-layer" value="cbofs2-1tdo/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="salt">
<attribute name="wms-layer" value="cbofs2-1tdo/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="dye_01">
<attribute name="wms-layer" value="cbofs2-1tdo/dye_01" />
<attribute name="standard_name" value="mass_concentration_of_dye_in_sea_water"/>
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/noaa/cbofs2-1tdo/2004_only/history_output/" suffix=".nc"
subdirs="false"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="UMCES ROMS - Case01_Y2004 - Agg" ID="estuarine_hypoxia/roms1/agg"
urlPath="estuarine_hypoxia/roms1/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="umces-roms-1" />
<attribute name="title" value="UMCESRoms (UMCES) - ROMS" />
<attribute name="id" value="eh.umces.umcesroms.Case01_Y2004" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Application of ROMS/TOMS with no hypoxic variables" />
<attribute name="creator_name" value="Ming Li" />
<attribute name="creator_email" value="" />
<attribute name="creator_url" value="http://www.umces.edu/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="salt">
<attribute name="coordinates" value="ocean_time s_rho lat_rho lon_rho" />
<attribute name="wms-layer" value="umces-roms-1/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="temp">
<attribute name="coordinates" value="ocean_time s_rho lat_rho lon_rho" />
<attribute name="wms-layer" value="umces-roms-1/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="u">
<attribute name="coordinates" value="ocean_time s_rho lat_u lon_u" />
</variable>
<variable name="v">
<attribute name="coordinates" value="ocean_time s_rho lat_v lon_v" />
</variable>
<variable name="ubar">
<attribute name="coordinates" value="ocean_time lat_u lon_u" />
</variable>
<variable name="vbar">
<attribute name="coordinates" value="ocean_time lat_v lon_v" />
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="false">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/umces/roms/Case01_Y2004/Output/history/"
suffix=".nc" subdirs="true"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="UMCES ROMS - Case02_Y2004 - Agg" ID="estuarine_hypoxia/roms2/agg"
urlPath="estuarine_hypoxia/roms2/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="umces-roms-2" />
<attribute name="title" value="UMCESRoms (UMCES) - ROMS" />
<attribute name="id" value="eh.umces.umcesroms.Case02_Y2004" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Application of ROMS/TOMS with no hypoxic variables" />
<attribute name="creator_name" value="Ming Li" />
<attribute name="creator_email" value="" />
<attribute name="creator_url" value="http://www.umces.edu/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="salt">
<attribute name="coordinates" value="ocean_time s_rho lat_rho lon_rho" />
<attribute name="wms-layer" value="umces-roms-2/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="temp">
<attribute name="coordinates" value="ocean_time s_rho lat_rho lon_rho" />
<attribute name="wms-layer" value="umces-roms-2/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="u">
<attribute name="coordinates" value="ocean_time s_rho lat_u lon_u" />
</variable>
<variable name="v">
<attribute name="coordinates" value="ocean_time s_rho lat_v lon_v" />
</variable>
<variable name="ubar">
<attribute name="coordinates" value="ocean_time lat_u lon_u" />
</variable>
<variable name="vbar">
<attribute name="coordinates" value="ocean_time lat_v lon_v" />
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="false">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/umces/roms/Case02_Y2004/Output/history/"
suffix=".nc" subdirs="true"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="ChesROMS-1TDO - Synoptic - Agg (2004-2005)" ID="estuarine_hypoxia/chesroms_1tdo/agg"
urlPath="estuarine_hypoxia/chesroms_1tdo/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="chesroms_1tdo" />
<attribute name="title" value="ChesROMS-1TDO (ODU) - ROMS-2.2" />
<attribute name="id" value="eh.odu.chesroms-1tdo.synoptic" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Application of ROMS/TOMS 2.2 with 1 term DO" />
<attribute name="creator_name" value="Malcolm Scully" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://odu.edu/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="salt">
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="wms-layer" value="chesroms_1tdo/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="temp">
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="wms-layer" value="chesroms_1tdo/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="u">
<attribute name="standard_name" value="eastward_sea_water_velocity"/>
<attribute name="wms-layer" value="chesroms_1tdo/sea_water_velocity" />
</variable>
<variable name="v">
<attribute name="standard_name" value="northward_sea_water_velocity"/>
<attribute name="wms-layer" value="chesroms_1tdo/sea_water_velocity" />
</variable>
<variable name="dye_01">
<attribute name="standard_name" value="mass_concentration_of_dye_in_sea_water"/>
<attribute name="wms-layer" value="chesroms_1tdo/dye_01" />
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/odu/chesroms_1TDO/synoptic/history_output/"
suffix=".nc" subdirs="true"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="ChesROMS - Synoptic - Agg" ID="estuarine_hypoxia/chesroms/agg"
urlPath="estuarine_hypoxia/chesroms/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="chesroms" />
<attribute name="title" value="ChesROMS (UMCES) - ROMS-2.2" />
<attribute name="id" value="eh.umces.chesroms.synoptic" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Application of ROMS/TOMS 2.2 with no hypoxic variables" />
<attribute name="creator_name" value="Wen Long" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.umces.edu/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="salt">
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="wms-layer" value="chesroms/salt" />
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="temp">
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="wms-layer" value="chesroms/temp" />
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="u">
<attribute name="standard_name" value="eastward_sea_water_velocity"/>
<attribute name="wms-layer" value="chesroms/sea_water_velocity" />
</variable>
<variable name="v">
<attribute name="standard_name" value="northward_sea_water_velocity"/>
<attribute name="wms-layer" value="chesroms/sea_water_velocity" />
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Estuarine_Hypoxia/umces/chesroms/synoptic/output/history_output/"
suffix=".nc" subdirs="true"/>
</aggregation>
</netcdf>
</dataset>
<dataset name="ChesROMS - Synoptic (Rotated vectors)" ID="estuarine_hypoxia/chesroms/vectors"
urlPath="estuarine_hypoxia/chesroms/vectors.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Estuarine_Hypoxia/umces/chesroms/synoptic_vectors/vectors.jnl">
<remove type="variable" name="LON_RHO_P_0"/>
<!--<remove type="variable" name="lon_rho_p"/>-->
<remove type="variable" name="LAT_RHO_P_0"/>
<!-- <remove type="variable" name="lat_rho_p"/>-->
<remove type="variable" name="ANGLE_P_0"/>
<remove type="variable" name="ANGLE_P"/>
<remove type="variable" name="MASK_P_0"/>
<remove type="variable" name="MASK_P"/>
<remove type="variable" name="U_P_0"/>
<remove type="variable" name="U_P"/>
<remove type="variable" name="V_P_0"/>
<remove type="variable" name="V_P"/>
<remove type="variable" name="UBAR_P_0"/>
<remove type="variable" name="UBAR_P"/>
<remove type="variable" name="VBAR_P_0"/>
<remove type="variable" name="VBAR_P"/>
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="chesroms-vectors" />
<attribute name="title" value="ChesROMS (UMCES) - ROMS-2.2" />
<attribute name="id" value="eh.umces.chesroms.synoptic_vectors" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Chesapeake Bay Application of ROMS/TOMS 2.2 with rotated vectors and no hypoxic variables" />
<attribute name="creator_name" value="Wen Long" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.umces.edu/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="ZETA_P">
<attribute name="coordinates" value="OCEAN_TIME LAT_RHO_P LON_RHO_P"/>
</variable>
<variable name="H_P">
<attribute name="coordinates" value="LAT_RHO_P LON_RHO_P"/>
</variable>
<variable name="UROT">
<attribute name="units" value="m/s"/>
<attribute name="coordinates" value="OCEAN_TIME S_RHO LAT_RHO_P LON_RHO_P"/>
<attribute name="standard_name" value="eastward_sea_water_velocity"/>
<attribute name="missing_value" type="float" value="-1.0e34"/>
<attribute name="wms-layer" value="chesroms-vectors/sea_water_velocity" />
</variable>
<variable name="VROT">
<attribute name="coordinates" value="OCEAN_TIME S_RHO LAT_RHO_P LON_RHO_P"/>
<attribute name="standard_name" value="northward_sea_water_velocity"/>
<attribute name="missing_value" type="float" value="-1.0e34"/>
<attribute name="units" value="m/s"/>
<attribute name="wms-layer" value="chesroms-vectors/sea_water_velocity" />
</variable>
<variable name="UBARROT">
<attribute name="coordinates" value="OCEAN_TIME LAT_RHO_P LON_RHO_P"/>
<attribute name="missing_value" type="float" value="-1.0e34"/>
<attribute name="standard_name" value="barotropic_eastward_sea_water_velocity"/>
<attribute name="units" value="m/s"/>
<attribute name="wms-layer" value="chesroms-vectors/barotropic_sea_water_velocity" />
</variable>
<variable name="VBARROT">
<attribute name="coordinates" value="OCEAN_TIME LAT_RHO_P LON_RHO_P"/>
<attribute name="missing_value" type="float" value="-1.0e34"/>
<attribute name="standard_name" value="barotropic_northward_sea_water_velocity"/>
<attribute name="units" value="m/s"/>
<attribute name="wms-layer" value="chesroms-vectors/barotropic_sea_water_velocity" />
</variable>
<variable name="S_RHO">
<attribute name="formula_terms" value="s: S_RHO eta: ZETA_P depth: H_P a: THETA_S b: THETA_B depth_c: HC"/>
</variable>
<attribute name="Conventions" value="CF-1.0"/>
</netcdf>
</dataset>
<dataset name="Observations">
<datasetScan name="Chesapeake CBP Sampling" path="estuarine_hypoxia/observations/cbp"
location="/data/ftp/upload/Estuarine_Hypoxia/Observations/CBP/NetCDF/1.1">
<serviceName>all</serviceName>
<filter>
<include wildcard="*.nc"/>
</filter>
<addDatasetSize/>
</datasetScan>
</dataset>
</dataset>
<dataset name="Shelf Hypoxia">
<catalogRef xlink:title="TAMU ROMS (remote)"
xlink:href="http://megara.tamu.edu:8080/thredds/gcoos_sura.xml" name=""/>
<catalogRef xlink:title="HYCOM/NCODA 1/25 Degree Analysis GOMl0.04/expt_20.1 (Jan-2003 to Jul-2010) (remote)"
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<catalogRef xlink:title="HYCOM/NCODA 1/25 Degree Analysis GOMl0.04/expt_30.1 (Jun 2010 to Present) (remote)"
xlink:href="http://tds.hycom.org/thredds/GOMl0.04/expt_30.1.xml" name=""/>
<catalogRef xlink:title="NCSU SABGOM ROMS ~1/25 Degree Forecast (remote)"
xlink:href="http://omglnx1.meas.ncsu.edu/thredds/catalog/fmrc/sabgom/catalog.xml" name=""/>
<catalogRef xlink:title="NCSU SABGOM ROMS ~1/25 Degree Forecast (remote)"
xlink:href="http://omglnx1.meas.ncsu.edu/thredds/catalog/fmrc/sabgom/catalog.xml" name=""/>
<catalogRef xlink:title="NRL.IASNFS.Archive.3-D Aggregation"
xlink:href="http://edac-dap3.northerngulfinstitute.org/thredds/catalog/ncom_archive_iasnfs3d_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NRL.IASNFS.Archive.SSH Aggregation"
xlink:href="http://edac-dap3.northerngulfinstitute.org/thredds/catalog/ncom_archive_iasnfs2d_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Gulf_of_Mexico Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_gomex_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Mid_Atlantic_Bight Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_mid_atl_bight_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_1 Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg1_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_2 Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg2_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_5 Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg5_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_6 Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg6_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_7 Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg7_agg/catalog.xml" name=""/>
<catalogRef xlink:title="NAVO.NCOM.Region_10 Aggregation"
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<catalogRef xlink:title="NAVO.NCOM.Region_1.pre_depth_change Aggregation"
xlink:href="http://edac-dap.northerngulfinstitute.org/thredds2/catalog/ncom_reg1_old_agg/catalog.xml" name=""/>
<dataset name="NOAA - NGOM - Agg" ID="noaa_ngom2" urlPath="noaa/NGOM.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<aggregation dimName="time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Shelf_Hypoxia/noaa/NGOM/" regExp=".*GOMUD-[0-9]{4}\.[0-9]{1}\.[0-9]{3}\.3D\.nc$"/>
</aggregation>
<variable name="zeta" shape="time ny nx" type="float">
<attribute name="coordinates" value="time lon lat"/>
<remove type="attribute" name="positive"/>
</variable>
<variable name="sigma">
<values> 0 -0.0007 -0.0014 -0.0027 -0.0054 -0.0109 -0.0217 -0.0435 -0.0870 -0.1304 -0.1739 -0.2174 -0.2609 -0.3043 -0.3478 -0.3913 -0.4348 -0.4783 -0.5217 -0.5652 -0.6087 -0.6522 -0.6957 -0.7391 -0.7826 -0.8261 -0.8696 -0.9130 -0.9565 -0.9783 -0.9891 -0.9946 -0.9973 -0.9986 -0.9993 -0.9997 -1.0000 </values>
<attribute name="positive" value="up"/>
<attribute name="standard_name" value="ocean_sigma_coordinate"/>
<attribute name="formula_terms" value="sigma: sigma eta: zeta depth: depth"/>
</variable>
<variable name="temp">
<attribute name="missing_value" type="float" value="0.0"/>
</variable>
<variable name="salt">
<attribute name="missing_value" type="float" value="0.0"/>
</variable>
<attribute name="Conventions" value="CF-1.0"/>
</netcdf>
</dataset>
<dataset name="Katja ROMS - b_clm_001 - Agg" ID="shelf_hypoxia/roms/agg"
urlPath="shelf_hypoxia/roms/agg.nc">
<serviceName>agg</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="katja_roms" />
<attribute name="title" value="ROMS (TAMU) - ROMS-3.0" />
<attribute name="id" value="sh.tamu.roms.b_clm_001" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="" />
<attribute name="creator_name" value="Katja Fennel" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.dal.ca/" />
<attribute name="cdm_data_type" value="Grid" />
<variable name="temp">
<attribute name="wms-layer" value="katja_roms/temp" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="sea_water_temperature"/>
</variable>
<variable name="salt">
<attribute name="wms-layer" value="katja_roms/salt" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="sea_water_salinity"/>
</variable>
<variable name="NO3">
<attribute name="wms-layer" value="katja_roms/NO3" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_nitrate_in_sea_water"/>
</variable>
<variable name="NH4">
<attribute name="wms-layer" value="katja_roms/NH4" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_ammonium_in_sea_water"/>
</variable>
<variable name="chlorophyll">
<attribute name="wms-layer" value="katja_roms/chlorophyll" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mass_concentration_of_chlorophyll_in_sea_water"/>
</variable>
<variable name="phytoplankton">
<attribute name="wms-layer" value="katja_roms/phytoplankton" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_phytoplankton_expressed_as_nitrogen_in_sea_water"/>
</variable>
<variable name="zooplankton">
<attribute name="wms-layer" value="katja_roms/zooplankton" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_zooplankton_expressed_as_nitrogen_in_sea_water"/>
</variable>
<variable name="SdetritusN">
<attribute name="wms-layer" value="katja_roms/SdetritusN" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_water_with_small_fraction"/>
</variable>
<variable name="oxygen">
<attribute name="wms-layer" value="katja_roms/oxygen" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_dissolved_molecular_oxygen_in_sea_water"/>
</variable>
<variable name="LdetritusN">
<attribute name="wms-layer" value="katja_roms/LdetritusN" />
<attribute name="missing_value" type="float" value="0.0"/>
<attribute name="standard_name" value="mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_water_with_large_fraction"/>
</variable>
<aggregation dimName="ocean_time" type="joinExisting" timeUnitsChange="true">
<scan location="/data/ftp/upload/Shelf_Hypoxia/dal/roms/b_clm_001/"
suffix=".nc" subdirs="false"/>
</aggregation>
</netcdf>
</dataset>
</dataset>
<dataset name="Inundation">
<datasetScan name="Inundation Observations" path="inundation/observations"
location="/data/ftp/upload/Inundation/observations/tropical/netcdf">
<serviceName>all</serviceName>
<filter>
<include wildcard="*.nc"/>
</filter>
<addDatasetSize/>
</datasetScan>
<dataset name="WW3 SOS Test" ID="inundation/sostest" urlPath="inundation/ww3.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/OWI.wind.only/slosh-spatial-netcdf.nc">
<attribute name="sos-link" value="http://www3.gomoos.org:8080/oostethys_sura/sos" />
<attribute name="title" value="SOS Test With WW3" />
</netcdf>
</dataset>
<dataset name="Slosh (UF)">
<dataset name="SLOSH - Ike - Galveston OWI Wind Only" ID="inundation/slosh/ike/galveston/owi_wind_only" urlPath="inundation/slosh/ike/galveston/owi_wind_only.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/OWI.wind.only/slosh-spatial-netcdf.nc">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="slosh_ike_galveston_owi_wind_only" />
<attribute name="title" value="SLOSH - IKE - Galveston - OWI Wind Only" />
<attribute name="id" value="in.uf.slosh.ike.galveston.owi_wind_only" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Slosh for Ike in Galveston using OWI Wind Only" />
<attribute name="creator_name" value="Justin Davis" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.coastal.ufl.edu" />
<attribute name="cdm_data_type" value="Grid" />
</netcdf>
</dataset>
<dataset name="SLOSH - Ike - Galveston OWI Wind Wave" ID="inundation/slosh/ike/galveston/owi_wind_wave" urlPath="inundation/slosh/ike/galveston/owi_wind_wave.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/OWI.wind.wave/slosh-spatial-netcdf.nc">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="slosh_ike_galveston_owi_wind_wave" />
<attribute name="title" value="SLOSH - IKE - Galveston - OWI Wind Wave" />
<attribute name="id" value="in.uf.slosh.ike.galveston.owi_wind_wave" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Slosh for Ike in Galveston using OWI Wind Wave" />
<attribute name="creator_name" value="Justin Davis" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.coastal.ufl.edu" />
<attribute name="cdm_data_type" value="Grid" />
</netcdf>
</dataset>
<dataset name="SLOSH - Ike - Galveston OWI Wind Wave MF" ID="inundation/slosh/ike/galveston/owi_wind_wave_mf" urlPath="inundation/slosh/ike/galveston/owi_wind_wave_mf.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/OWI.wind.wave.mf/slosh-spatial-netcdf.nc">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="slosh_ike_galveston_owi_wind_wave_mf" />
<attribute name="title" value="SLOSH - IKE - Galveston - OWI Wind Wave MF" />
<attribute name="id" value="in.uf.slosh.ike.galveston.owi_wind_wave_mf" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Slosh for Ike in Galveston using OWI Wind Wave MF" />
<attribute name="creator_name" value="Justin Davis" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.coastal.ufl.edu" />
<attribute name="cdm_data_type" value="Grid" />
</netcdf>
</dataset>
<dataset name="SLOSH - Ike - Galveston Wind Only" ID="inundation/slosh/ike/galveston/wind_only" urlPath="inundation/slosh/ike/galveston/wind_only.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/wind.only/slosh-spatial-netcdf.nc">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="slosh_ike_galveston_wind_only" />
<attribute name="title" value="SLOSH - IKE - Galveston - Wind Only" />
<attribute name="id" value="in.uf.slosh.ike.galveston.wind_only" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Slosh for Ike in Galveston using Wind Only" />
<attribute name="creator_name" value="Justin Davis" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.coastal.ufl.edu" />
<attribute name="cdm_data_type" value="Grid" />
</netcdf>
</dataset>
<dataset name="SLOSH - Ike - Galveston Wind Only Garrat" ID="inundation/slosh/ike/galveston/wind_only_garrat" urlPath="inundation/slosh/ike/galveston/wind_only_garrat.nc" >
<serviceName>all</serviceName>
<netcdf xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2"
location="/data/ftp/upload/Inundation/uf/slosh_tropical/runs/Ike/galveston/wind.only.garrat/slosh-spatial-netcdf.nc">
<attribute name="wms-link" value="http://testbedapps.sura.org/ncWMS/wms" />
<attribute name="wms-layer-prefix" value="slosh_ike_galveston_wind_only_garrat" />
<attribute name="title" value="SLOSH - IKE - Galveston - Wind Only Garrat" />
<attribute name="id" value="in.uf.slosh.ike.galveston.wind_only_garrat" />
<attribute name="naming_authority" value="noaa.ioos.testbed" />
<attribute name="summary" value="Slosh for Ike in Galveston using Wind Only Garrat" />
<attribute name="creator_name" value="Justin Davis" />
<attribute name="creator_email" value="[email protected]" />
<attribute name="creator_url" value="http://www.coastal.ufl.edu" />
<attribute name="cdm_data_type" value="Grid" />
</netcdf>
</dataset>
</dataset>
</dataset>
</catalog>