diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml index cc41c55..2b30c8c 100644 --- a/.github/workflows/linting.yml +++ b/.github/workflows/linting.yml @@ -14,10 +14,26 @@ jobs: steps: - uses: actions/checkout@main - - name: Install poetry - run: pipx install poetry - - uses: actions/setup-python@main + + - uses: actions/setup-python@v5 + with: + python-version-file: '.python-version' + + - uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + + - uses: awalsh128/cache-apt-pkgs-action@latest with: - cache: 'poetry' - - run: poetry install + packages: gdal-bin libgdal-dev + + - name: Setup uv python environment + run: uv venv + + - name: uv lock check + run: uv lock --locked --offline + + - name: uv sync + run: uv sync --all-extras + - uses: pre-commit/action@main diff --git a/.python-version b/.python-version index cc1923a..bd28b9c 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.8 +3.9 diff --git a/Dockerfile b/Dockerfile index b8419c9..ca7160a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,36 +1,32 @@ -FROM python:3.8-slim-buster +FROM python:3.9-slim-bookworm AS base +COPY --from=ghcr.io/astral-sh/uv:0.7.4 /uv /uvx /bin/ LABEL maintainer="IFRC" LABEL org.opencontainers.image.source="https://github.com/IFRCGo/go-risk-module-api" ENV PYTHONUNBUFFERED=1 +ENV UV_COMPILE_BYTECODE=1 +ENV UV_LINK_MODE=copy +ENV UV_PROJECT_ENVIRONMENT="/usr/local/" + WORKDIR /code -RUN apt-get -y update \ +RUN --mount=type=cache,target=/root/.cache/uv \ + --mount=type=bind,source=uv.lock,target=uv.lock \ + --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ + apt-get update -y \ && apt-get install -y --no-install-recommends \ - git \ - g++ \ - curl \ - wait-for-it \ - gdal-bin \ - libgdal-dev - - -ARG CPLUS_INCLUDE_PATH=/usr/include/gdal -ARG C_INCLUDE_PATH=/usr/include/gdal -RUN pip install GDAL==2.4.0 - -COPY pyproject.toml poetry.lock /code/ - -# Upgrade pip and install python packages for code -RUN pip install --upgrade --no-cache-dir pip poetry \ - && poetry --version \ - # Configure to use system instead of virtualenvs - && poetry config virtualenvs.create false \ - && poetry install --no-root \ - # Remove installer - && pip uninstall -y poetry virtualenv-clone virtualenv + # Build required packages + gdal-bin build-essential gcc g++ libc-dev libgdal-dev libproj-dev \ + # Helper packages + git curl wait-for-it procps \ + && uv lock --locked --offline \ + && uv sync --frozen --no-install-project --all-groups \ + # Clean-up + && apt-get remove -y build-essential gcc g++ libc-dev libgdal-dev libproj-dev \ + && apt-get autoremove -y \ + && rm -rf /var/lib/apt/lists/* COPY . /code/ diff --git a/common/management/commands/update_country_data.py b/common/management/commands/update_country_data.py index 45024b7..6ded22c 100644 --- a/common/management/commands/update_country_data.py +++ b/common/management/commands/update_country_data.py @@ -17,16 +17,15 @@ def handle(self, *args, **options): independent = data["independent"] is_deprecated = data["is_deprecated"] record_type = data["record_type"] - print(record_type) iso3 = data["iso3"] if iso3: country = Country.objects.filter(iso3=iso3.lower()) if country.exists(): - country = country.last() - country.independent = independent - country.is_deprecated = is_deprecated - country.record_type = record_type - country.save(update_fields=["independent", "is_deprecated", "record_type"]) + for country_item in country: + country_item.independent = independent + country_item.is_deprecated = is_deprecated + country_item.record_type = record_type + country_item.save(update_fields=["independent", "is_deprecated", "record_type"]) cluster_country_name = [ "West Africa Country Cluster", "Tunis Country Cluster", diff --git a/imminent/management/commands/import_gwis_data.py b/imminent/management/commands/import_gwis_data.py index ebb23a0..7c9070c 100644 --- a/imminent/management/commands/import_gwis_data.py +++ b/imminent/management/commands/import_gwis_data.py @@ -17,7 +17,7 @@ def handle(self, *args, **kwargs): # Get all the countries with iso3 codes that are not deprecated and independent country_iso3 = list(Country.objects.filter(is_deprecated=False, independent=True).values_list("iso3", flat=True)) - for year in range(2024, 2025): + for year in range(2003, 2026): for iso3 in country_iso3: if iso3: self.import_monthly_data(iso3, year) @@ -41,7 +41,7 @@ def import_monthly_data(self, iso3, year): self.create_gwis_entry(iso3, month, year, GWIS.DSRTYPE.MONTHLY) def import_cumulative_data(self, iso3, year): - url = f"https://api2.effis.emergency.copernicus.eu/statistics/v2/dsr/cumulative?country={iso3.upper()}&year={year}" + url = f"https://api2.effis.emergency.copernicus.eu/statistics/v2/dsr/monthly?country={iso3.upper()}&year={year}" response = requests.get(url, verify=False) if response.status_code != 200: @@ -55,7 +55,7 @@ def import_cumulative_data(self, iso3, year): cumulative_response = response_data.get("dsrcumulative", []) for month in cumulative_response: - self.create_gwis_entry(iso3, month, year, GWIS.DSRTYPE.CUMULATIVE) + self.create_gwis_entry(iso3, month, year, GWIS.DSRTYPE.CUMMULATIVE) def create_gwis_entry(self, iso3, data, year, dsr_type): country = Country.objects.filter(iso3=iso3).first() diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index 7d0fe62..0000000 --- a/poetry.lock +++ /dev/null @@ -1,2457 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - 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a/pyproject.toml b/pyproject.toml index 5bd5f3a..b126f0c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,51 +1,59 @@ -[tool.poetry] +[project] name = "risk-module-server" version = "0.1.0" description = "" -authors = ["IFRC"] +authors = [{ name = "IFRC" }] +requires-python = "~=3.9.1" license = "GNU Affero General Public License v3.0" +dependencies = [ + "celery[redis]==5.1.1", + "djangorestframework-camel-case==1.2.0", + "djangorestframework==3.12.4", + "django-celery-beat==2.2.1", + "django-cors-headers==3.7.0", + "django-crispy-forms==1.12.0", + "django-storages==1.11.1", + "django-enumfield==2.0.2", + "django-filter==2.4.0", + "django-redis==5.0.0", + "Django==3.2.17", + "ipython", + "factory-boy", + "drf-writable-nested", + "openpyxl==3.0.9", + "psycopg2-binary==2.9.10", + "pandas==2.3.1", + "numpy>1.24.4", + "requests", + "geopy==2.2.0", + "gunicorn~=20.0.4", + "boto3==1.20.33", + "lxml==6.0.0", + "Shapely==1.8.1.post1", + "beautifulsoup4==4.13.4", + "pyproj==3.3.1", + 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"==1.2.0" -python-Levenshtein = "==0.21.1" -django-health-check = "*" -psutil = "*" +[tool.uv] +package = false -[tool.poetry.dev-dependencies] +[poetry.group.dev.dependencies] pytest-django = "*" django-stubs = "==4.2.6" # NOTE: 4.2.7 is messing with TextChoices/IntergerChoices djangorestframework-stubs = { version = "*", allow-prereleases = true } +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" + [tool.django-stubs] django_settings_module = "main.settings" @@ -97,7 +105,3 @@ skip = [ ".venv/", "**/migrations/*.py", ] - -[build-system] -requires = ["poetry-core>=1.0.0"] -build-backend = "poetry.core.masonry.api" diff --git a/seasonal/INFORM_Risk_2025_v070.xlsx b/seasonal/INFORM_Risk_2025_v070.xlsx new file mode 100644 index 0000000..cd7db1f Binary files /dev/null and b/seasonal/INFORM_Risk_2025_v070.xlsx differ diff --git a/seasonal/management/commands/aggregate_gwis_data.py b/seasonal/management/commands/aggregate_gwis_data.py index 8c47364..9521276 100644 --- a/seasonal/management/commands/aggregate_gwis_data.py +++ b/seasonal/management/commands/aggregate_gwis_data.py @@ -42,7 +42,7 @@ def handle(self, *args, **options): new_df = new_df.replace(np.nan, None) country_groups = new_df.groupby("country") for country_name, group in country_groups: - gwis_data = {"country": Country.objects.filter(name__icontains=country_name).first()} + gwis_data = {"country": Country.objects.filter(name=country_name).first()} for month in month_mapping.values(): gwis_data[month] = ( group.loc[group["month"] == month, "dsr_avg"].values[0] if month in group["month"].values else None diff --git a/seasonal/management/commands/create_hazard_information.py b/seasonal/management/commands/create_hazard_information.py index 871f16b..5d0e5ff 100644 --- a/seasonal/management/commands/create_hazard_information.py +++ b/seasonal/management/commands/create_hazard_information.py @@ -48,7 +48,7 @@ def handle(self, **options): map_hazard_type = HazadTypeList[1] elif hazard_type == "DR": map_hazard_type = HazadTypeList[2] - if map_hazard_type: + if not map_hazard_type: continue url = f"https://thinkhazard.org/en/report/{country_id}/{hazard_type}.json" diff --git a/seasonal/management/commands/create_risk_score.py b/seasonal/management/commands/create_risk_score.py index 6d0aab1..ddeff2b 100644 --- a/seasonal/management/commands/create_risk_score.py +++ b/seasonal/management/commands/create_risk_score.py @@ -54,7 +54,7 @@ def handle(self, **options): df1 = inform_score_dataframe df1["ISO3"] = df1["ISO3"].str.upper() # latest inform score data - df2 = pd.read_excel(file1, sheet_name="INFORM Risk 2024 (a-z)", skiprows=(0, 2), usecols="A, B, S, AE", engine="openpyxl") + df2 = pd.read_excel(file1, sheet_name="INFORM Risk 2025 (a-z)", skiprows=(0, 2), usecols="A, B, S, AE", engine="openpyxl") df2.rename( {"VULNERABILITY": "Vulnerability", "LACK OF COPING CAPACITY": "LCC"}, axis=1, @@ -118,7 +118,7 @@ def handle(self, **options): ) risk_score_data = { "country": Country.objects.filter( - iso3__icontains=row["ISO3"], + name=row["name"], iso3__isnull=False, record_type__isnull=False, record_type=Country.CountryType.COUNTRY, @@ -141,4 +141,5 @@ def handle(self, **options): "population_in_thousands": row["Population_in_thousands"], "vulnerability": row["Vulnerability"], } - RiskScore.objects.create(**risk_score_data) + if risk_score_data["country"]: + RiskScore.objects.create(**risk_score_data) diff --git a/seasonal/scripts/fetch_inform_data.py b/seasonal/scripts/fetch_inform_data.py index f9c1e09..216e0aa 100644 --- a/seasonal/scripts/fetch_inform_data.py +++ b/seasonal/scripts/fetch_inform_data.py @@ -15,7 +15,7 @@ def get_maximum_rows(*, sheet_object): def fetch_inform_data(file): # NOTE: set `data_only=True` to read cell value instead of formula workbook = openpyxl.load_workbook(file, data_only=True) - worksheet = workbook.get_sheet_by_name("INFORM Risk 2022 (a-z)") + worksheet = workbook.get_sheet_by_name("INFORM Risk 2025 (a-z)") max_rows = get_maximum_rows(sheet_object=worksheet) # Iterate the loop to read the cell values data_all = [] diff --git a/seasonal/scripts/fetch_inform_seasonal.py b/seasonal/scripts/fetch_inform_seasonal.py index 0bab68f..1286cb1 100644 --- a/seasonal/scripts/fetch_inform_seasonal.py +++ b/seasonal/scripts/fetch_inform_seasonal.py @@ -26,7 +26,7 @@ def fetch_inform_seasonal(file): workbook = openpyxl.load_workbook(file) worksheet = workbook.get_sheet_by_name("Sheet1") max_rows = get_maximum_rows(sheet_object=worksheet) - hazard_list = [HazardType.CYCLONE, HazardType.DROUGHT, HazardType.FLOOD] + hazard_list = [HazardType.CYCLONE.value, HazardType.DROUGHT.value, HazardType.FLOOD.value] for i in range(2, max_rows + 1): iso3 = worksheet.cell(row=i, column=1).value hazard_type = parse_hazard_type(worksheet.cell(row=i, column=2).value) diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..552c491 --- /dev/null +++ b/uv.lock @@ -0,0 +1,1252 @@ +version = 1 +revision = 2 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