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ImagingDataCommons/pyplastimatch

Allow multiple metadata tags in pyplastimatch convert

The plastimatch convert function allows setting multiple metadata tags, but they need to be passed like this: Running plastimatch convert with the specified arguments: plastimatch convert --input ...

• atriaybagur
·
• 1
·
• Opened 
  28 days ago
·
• #13

ImagingDataCommons/pyplastimatch

Error For Dice Score

Under certain circumstances, the parsing of the results of the dice score command result in an error: Computing DC between the two images with plastimatch dice --dice ... Done. Traceback (most recent ...

bug

help wanted

• LennyN95
·
• 1
·
• Opened 
  on Jun 4, 2024
·
• #11

ImagingDataCommons/pyplastimatch

Dependencies are not registered correctly.

Running pip install pyplastimatch won t install any dependencies. Apparently, with the latest release (0.4.4) something wen t wrong in the automated build action and the defined dependencies got ignored. ...

bug

• LennyN95
·
• 1
·
• Opened 
  on Feb 28, 2024
·
• #10

ImagingDataCommons/pyplastimatch

Update install to fetch from a specific `latest-binaries` tag?

Right now, we are fetching the release tagged as latest : https://github.com/ImagingDataCommons/pyplastimatch/blob/8df34cfdd1d343a9d5903dcc5355973636a6845f/pyplastimatch/utils/install.py#L136 Which is ...

enhancement

• denbonte
·
• Opened 
  on Feb 9, 2024
·
• #9

ImagingDataCommons/pyplastimatch

Add/update resources

For instance, add the notebooks at: https://github.com/denbonte/plastimatch_builds/tree/main/notebooks

documentation

enhancement

• denbonte
·
• 1
·
• Opened 
  on Sep 27, 2023
·
• #6

ImagingDataCommons/pyplastimatch

Update Dockerfile

Update the line for the install of PyPlastimatch once the new pip release is ready. RUN pip install git+https://github.com/AIM-Harvard/pyplastimatch.git@bin

enhancement

• denbonte
·
• Opened 
  on Sep 27, 2023
·
• #5

ImagingDataCommons/pyplastimatch

viz_utils.AxialSliceSegmaskViz duplicates the figure when changing slices

Hi Dennis, Thanks for your work on this repo! I was just running through cohort preparation notebook you created and noticed that when using viz_utils.AxialSliceSegmaskViz() at the end to view the images/segmentations ...

bug

• kirbyju
·
• 5
·
• Opened 
  on Jun 1, 2023
·
• #2

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