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Josh Loecker edited this page Mar 16, 2021 · 18 revisions

MAPT

This page should get you up-and-running for this pipeline

Getting Started

Usage Installaion & Setup Running the Pipeline Updating the Pipeline Notes to Future Maintainers Running Guppy in a Singularity Container

Support

Table of Contents

  1. Home
  2. Usage
  3. Installation
  4. Parameters & Configuration Files
  5. Running the Pipeline
  6. Updating the Pipeline
  7. Guppy in a Singularity Container
  8. Example SLURM Scripts
  9. Sample Data
    a. Expected Outcomes
    b. Potential Errors
  10. Notes to Future Maintainers
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