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RNAseq_Enrichment_Package

This package is designed for RNA-seq data analysis, DEG identification, and enrichment visualization.

Collaboration

This project was developed as part of a collaborative effort:

  • Yael Campoy Fernández: Main developer responsible for writing the R code.
  • Judy Alshedah: GitHub management, version control, and documentation.

Features

  • Import RNA-seq count data and filter low-expressed genes.
  • Identify differentially expressed genes (DEGs) using edgeR.
  • Perform enrichment analysis (GO and KEGG pathways) using clusterProfiler.
  • Export results to Excel and visualize enrichment results (dotplot, cnetplot, treeplot).

Installation

You can install the package from GitHub using devtools:

install.packages("devtools")
devtools::install_github("JudyNader/RNAseq_Enrichment_Package")