DiCoLo/NAMESPACE at main · KlugerLab/DiCoLo · GitHub

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# Generated by roxygen2: do not edit by hand

export(ClusterGenes)
export(ComputeDifferentialOperator)
export(ComputeGeneEMD)
export(ComputeGraphOperator)
export(FindKneePoint)
export(LoadGeneEMD)
export(ObtainGeneTSNE)
export(RankGeneModules)
export(RunSVD)
export(SelectCommonGenes)
export(SelectSignificantGenes)
export(VisualizeGeneTSNE)
importFrom(GeneTrajectory,CoarseGrain)
importFrom(GeneTrajectory,GetGraphDistance)
importFrom(GeneTrajectory,LoadGeneDistMat)
importFrom(GeneTrajectory,RunDM)
importFrom(Matrix,Matrix)
importFrom(Matrix,writeMM)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rtsne,Rtsne)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,VariableFeatures)
importFrom(dplyr,"%>%")
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme_minimal)
importFrom(locfdr,locfdr)
importFrom(rARPACK,eigs_sym)