MOSAIC/NAMESPACE at main · KlugerLab/MOSAIC · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
# Generated by roxygen2: do not edit by hand

export(calculate_empirical_pvalue)
export(compute_module_similarity)
export(find_elbow_kneedle)
export(find_partition_hclust)
export(plot_eigen)
export(plot_mds_cluster)
export(run_DC_test)
export(run_MOSAIC)
export(simulate_multimodal_data)
importFrom(Matrix,Matrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(RSpectra,eigs_sym)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,ScaleData)
importFrom(Seurat,SplitObject)
importFrom(cluster,silhouette)
importFrom(doParallel,registerDoParallel)
importFrom(foreach,`%dopar%`)
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(methods,as)
importFrom(parallel,clusterExport)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(rlang,.data)
importFrom(stats,aggregate)
importFrom(stats,as.dist)
importFrom(stats,cmdscale)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,rnorm)
importFrom(vegan,adonis2)