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fix typo
1 parent 0947658 commit 31db819

1 file changed

Lines changed: 6 additions & 6 deletions

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FaQCs.pl

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -2320,7 +2320,7 @@ sub filter_adapter
23202320
my @match;
23212321
$mismatchRate = $mismatchRate*100;
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my $adapter;
2323-
my $adapater_count=0;
2323+
my $adapter_count=0;
23242324
my $adapter_name;
23252325
my $s_len=length($s);
23262326
my $pos5=0;
@@ -2346,8 +2346,8 @@ sub filter_adapter
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@match = String::Approx::aslice($adapter, ["i", "S ${mismatchRate}% I 0 D 0"], $s);
23472347
if (defined $match[0][0])
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{
2349-
$adapater_count++;
2350-
if ($adapater_count >1){
2349+
$adapter_count++;
2350+
if ($adapter_count >1){
23512351
last;
23522352
}
23532353
$adapter_name=$key;
@@ -2366,16 +2366,16 @@ sub filter_adapter
23662366
# same adapter sencond match
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my $match = String::Approx::amatch($adapter, ["i", "S ${mismatchRate}% I 0 D 0"], $s);
23682368
if ($match){
2369-
$adapater_count++;
2369+
$adapter_count++;
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last;
23712371
}
23722372

23732373
}
23742374
}
2375-
if ($adapater_count>1){
2375+
if ($adapter_count>1){
23762376
## filter read if there are more than one adapter (or same adapter match twice) in a read
23772377
return (1,"",$pos5,$pos3,$adapter_name);
2378-
}elsif($adapater_count){
2378+
}elsif($adapter_count){
23792379
return (1,$s,$pos5,$pos3,$adapter_name);
23802380
}else{
23812381
return (0,$s,$pos5,$pos3,"");

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