README.md

Documentation

The nnU-Net documentation is being reorganized into clearer entry points.

Start here:

• If you want to train nnU-Net on your own dataset, go to Getting Started.
• If you already know what you want to do and just need task-focused instructions, go to How-to Guides.
• If you need formats, commands, or configuration details, go to Reference.
• If you want background and design rationale, go to Explanation.
• If you are looking for challenge-specific writeups, go to Case Studies.

Recommended paths

New users

1. Installation and setup
2. Prepare a dataset
3. Plan and preprocess
4. Train models

Users coming from nnU-Net v1

1. TLDR migration guide from v1
2. What is different in v2?

Researchers extending nnU-Net

1. How nnU-Net works
2. Plans and configuration reference
3. Extending nnU-Net
4. Intensity normalization

Notes

• Most content still lives in the existing markdown files in this folder.
• These new landing pages provide a stable information architecture before the detailed pages are migrated.