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Aditya Wardianto
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refactor: update README
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README.md

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# UNET++ based CAC Scoring
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# Mobile UNet++ Model for Coronary Artery Calcium Scoring
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**THIS REPO IS STILL UNDER DEVELOPMENT, IMPROVEMENT IS WELCOMED!**
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A UNet++ based ML model to do automatic CAC scoring
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A UNet++ with MobileNetv2 block based ML model to do automatic CAC scoring
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This is a repo to develop my Undergraduate Thesis on Biomedical Engineering
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### Development Environment
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- WSL2 Ubuntu Linux 20.04.4 LTS
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- Miniconda (for environment management)
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- Poetry (for dependencies management)
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- Python 3.9.12
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- Python 3.10.8
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### Library
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- Tensorflow
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- Streamlit
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- Pydicom
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- PyDicom
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- Numpy
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### Reference
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- Paper:
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- [Original Paper using COCA Dataset (they use UNET Architecture)](https://www.nature.com/articles/s41746-021-00460-1)
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- [Calcium Scoring Method](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5487233/)
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- Code:
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- [keras-unet-collection](https://github.com/yingkaisha/keras-unet-collection)
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- [keras-unet-collection](https://github.com/yingkaisha/keras-unet-collection)
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- [azcopy install script](https://gist.github.com/aessing/76f1200c9f5b2b9671937b3b0ed5fd6f)
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# Dataset
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The dataset used for this model is provided by Stanford AI COCA Dataset, this dataset can be accessed through this [link](https://stanfordaimi.azurewebsites.net/datasets/e8ca74dc-8dd4-4340-815a-60b41f6cb2aa.)
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The dataset used for this model is provided by Stanford AI COCA Dataset, this dataset can be accessed through this [link](https://stanfordaimi.azurewebsites.net/datasets/e8ca74dc-8dd4-4340-815a-60b41f6cb2aa)
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This model is using Gated MRI Data from the COCA Dataset consisting of the MRI image saved in a DICOM format and the calcium mask saved in a xml plist format.
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Other dataset usage will be developed after the implementation of the COCA Dataset has been done.
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Other dataset usage will be developed after the implementation of the COCA Dataset has been done.

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