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Commit 79467e2

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danamoukdanamouk
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separates mimic & nwicu mappings.
1 parent c34baed commit 79467e2

16 files changed

+14007
-452
lines changed

‎mimic-iv/concepts/concept_map/chartevents_to_loinc.csv‎

Lines changed: 43 additions & 56 deletions
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‎mimic-iv/concepts/concept_map/chartevents_to_omop.csv‎

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‎mimic-iv/concepts/concept_map/labevents_to_loinc.csv‎

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‎mimic-iv/concepts/concept_map/labevents_to_omop.csv‎

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‎mimic-iv/concepts/concept_map/prescriptions_to_omop.csv‎

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‎mimic-iv/concepts/concept_map/prescriptions_to_rxnorm.csv‎

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‎mimic-iv/concepts/concept_map/procedureevents_to_omop.csv‎

Lines changed: 170 additions & 170 deletions
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‎mimic-iv/concepts/concept_map/procedureevents_to_snomed.csv‎

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‎nwicu/concepts/concept_map/chartevents_to_loinc.csv‎

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subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,confidence,comment,reviewer_id
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northwestern-itemid:320045,Heart Rate,skos:exactMatch,loinc:8867-4,Heart rate,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:320277,O2 saturation pulseoxymetry,skos:exactMatch,loinc:59408-5,Oxygen saturation in Arterial blood by Pulse oximetry,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:320210,Respiratory Rate,skos:exactMatch,loinc:9279-1,Respiratory rate,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
5+
northwestern-itemid:320180,Blood Pressure diastolic,skos:exactMatch,loinc:76535-4,Diastolic blood pressure by Noninvasive,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:320179,Blood Pressure systolic,skos:exactMatch,loinc:76534-7,Systolic blood pressure by Noninvasive,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:323761,Temperature,skos:exactMatch,loinc:8310-5,Body temperature,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:320051,R Arterial Line Blood Pressure,skos:exactMatch,loinc:8462-4,Diastolic blood pressure,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:320050,R Arterial Line Blood Pressure,skos:exactMatch,loinc:8480-6,Systolic blood pressure,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
10+
northwestern-itemid:326531,Weight,skos:exactMatch,loinc:29463-7,Body weight,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
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northwestern-itemid:300001,BMI,skos:exactMatch,loinc:39156-5,Body mass index (BMI) [Ratio],semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396
12+
northwestern-itemid:326707,Height,skos:exactMatch,loinc:8302-2,Body height,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-5561-6396

‎nwicu/concepts/concept_map/chartevents_to_omop.csv‎

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subject_id,subject_label,predicate_id,object_id,object_label,mapping_justification,author_id,confidence,comment,reviewer_id
2+
northwestern-itemid:320045,Heart Rate,skos:exactMatch,omop_id:3027018,Heart rate,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
3+
northwestern-itemid:320277,O2 saturation pulseoxymetry,skos:exactMatch,omop_id:40762499,Oxygen saturation in Arterial blood by Pulse oximetry,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
4+
northwestern-itemid:320210,Respiratory Rate,skos:exactMatch,omop_id:3024171,Respiratory rate,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
5+
northwestern-itemid:320180,Blood Pressure diastolic,skos:exactMatch,omop_id:21492240,Diastolic blood pressure by Noninvasive,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
6+
northwestern-itemid:320179,Blood Pressure systolic,skos:exactMatch,omop_id:21492239,Systolic blood pressure by Noninvasive,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
7+
northwestern-itemid:323761,Temperature,skos:exactMatch,omop_id:3020891,Body temperature,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
8+
northwestern-itemid:320051,R Arterial Line Blood Pressure,skos:exactMatch,omop_id:3012888,Diastolic blood pressure,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
9+
northwestern-itemid:320050,R Arterial Line Blood Pressure,skos:exactMatch,omop_id:3004249,Systolic blood pressure,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
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northwestern-itemid:326531,Weight,skos:exactMatch,omop_id:3025315,Body weight,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
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northwestern-itemid:300001,BMI,skos:exactMatch,omop_id:3038553,Body mass index (BMI) [Ratio],semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884
12+
northwestern-itemid:326707,Height,skos:exactMatch,omop_id:3036277,Body height,semapv:ManualMappingCuration,orcid:0000-0001-5561-6396,1.0,,orcid:0000-0001-8822-1884

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