From 485aa89eafe3841905b87c42e7069be50101266a Mon Sep 17 00:00:00 2001 From: yhy808 <123591630+yhy808@users.noreply.github.com> Date: Wed, 2 Oct 2024 20:41:48 -0400 Subject: [PATCH 1/2] Update and rename readme.txt to readme.md --- readme.txt => readme.md | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) rename readme.txt => readme.md (71%) diff --git a/readme.txt b/readme.md similarity index 71% rename from readme.txt rename to readme.md index ef90b8b..eed40e4 100644 --- a/readme.txt +++ b/readme.md @@ -1,31 +1,31 @@ NEURON mod files for the Na, K-A, and K-DR currents from the paper: Safronov and Vogel, J.Physiol. 487:91-106 (1995). -Running the kinetics_na.hoc or kinetics_k.hoc simulation files +- Running the kinetics_na.hoc or kinetics_k.hoc simulation files will show the activation and inactivation steady-states, the time constants, and a family of curves generated modeling the same protocols used in the paper. -Markers show the experimental values estimated from Figs.4C +- Markers show the experimental values estimated from Figs.4C (Na), 8C (KA), and 10C (KDR) of the paper. Note that m is used rather than the more usual m^3 for activation of the Na current. Na recovery from inactivation is not implemented. -Under unix systems: +## Under unix systems: to compile the mod files use the command -nrnivmodl +``` nrnivmodl ``` and run the simulation hoc file with the command -nrngui kinetics_na.hoc +``` nrngui kinetics_na.hoc ``` or -nrngui kinetics_k.hoc +``` nrngui kinetics_k.hoc ``` - -Under Windows using NEURON 5.1: -to compile the mod files use the "mknrndll" command. +## Under Windows using NEURON 5.1: +to compile the mod files use the ``` mknrndll ``` command. A double click on the simulation files kinetics_na.hoc or kinetics_k.hoc will open the simulation windows. +\ Questions on the model parameters should be directed to the authors. From 356b6915c4a8bc15c6e0908655ba45c9adb44939 Mon Sep 17 00:00:00 2001 From: yhy808 <123591630+yhy808@users.noreply.github.com> Date: Sun, 6 Oct 2024 11:48:27 -0400 Subject: [PATCH 2/2] added changelog and put journal name in Italics --- readme.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/readme.md b/readme.md index eed40e4..a915b43 100644 --- a/readme.md +++ b/readme.md @@ -1,5 +1,5 @@ NEURON mod files for the Na, K-A, and K-DR currents from the paper: -Safronov and Vogel, J.Physiol. 487:91-106 (1995). +Safronov and Vogel, *J.Physiol*. 487:91-106 (1995). - Running the kinetics_na.hoc or kinetics_k.hoc simulation files will show the activation and inactivation steady-states, @@ -31,3 +31,7 @@ authors. Questions on how to use this model with NEURON should be directed to michele@pa.ibf.cnr.it + +Changelog: +---------- +2024-10: Converted readme to markdown