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CGAPConfig.pm
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##
## Parameters for back-end data servers for CGAP
##
# Copyright SRA International
#
# Distributed under the OSI-approved BSD 3-Clause License.
# See http://ncip.github.com/pathway-interaction-database/LICENSE.txt for details.
package CGAPConfig;
require Exporter;
@ISA = qw(Exporter);
@EXPORT = qw(
$CGAP_SCHEMA
$CGAP_SCHEMA2
$CMAP_SCHEMA
$RFLP_SCHEMA
DB_USER
DB_PASS
DB_INSTANCE
GENE_SERVER_PORT
CYT_SERVER_PORT
BLAST_QUERY_SERVER_PORT
LIBRARY_SERVER_PORT
GL_SERVER_PORT
PATHWAY_SERVER_PORT
MICROARRAY_SERVER_PORT
GXS_SERVER_PORT
INIT_DATA_HOME
INIT_SAGE_DATA_HOME
KEGG_DIR
KEGG_ARCFILE
KEGG_NODEFILE
KEGG_GENEFILE
KEGG_PATHFILE
KEGG_NAMEFILE
KEGG_COORDFILE
KEGG_ENZYME
KEGG_COMPOUND
HS_GL_DATA
MM_GL_DATA
CACHE_ROOT
CACHE_ID_FILE
HS_GXS_DATA
MM_GXS_DATA
HS_UG_BLAST
MM_UG_BLAST
NCI60_STATS
NCI60_VIEW
SAGE_STATS
SAGE_VIEW
SAGE_GROUP_RAW
SAGE_GROUP_STATS
SAGE_GROUP_VIEW
NOVARTIS_RAW
NOVARTIS_STATS
NOVARTIS_VIEW
SAGEFREQ
GXS_CACHE_PREFIX
XP_CACHE_PREFIX
GL_CACHE_PREFIX
MICROARRAY_CACHE_PREFIX
LICR_CACHE_PREFIX
SDGED_CACHE_PREFIX
BASE
IMG_DIR
SAFE_IPS
);
use DB_SCHEMAConfig;
if (-d "/app/oracle/product/dbhome/current") {
$ENV{'ORACLE_HOME'} = "/app/oracle/product/dbhome/current";
} elsif (-d "/app/oracle/product/8.1.7") {
$ENV{'ORACLE_HOME'} = "/app/oracle/product/8.1.7";
} elsif (-d "/app/oracle/product/8.1.6") {
$ENV{'ORACLE_HOME'} = "/app/oracle/product/8.1.6";
} elsif (-d "/app/oracle/product/10gClient") {
$ENV{'ORACLE_HOME'} = "/app/oracle/product/10gClient";
}
$ENV{'PATH'} = "$ENV{'PATH'}:/app/oracle/product/10gClient:/app/oracle/product/10gClient/lib:/app/oracle/product/10gClient/instantclient:/app/oracle/product/10gClient/bin";
$ENV{'LD_LIBRARY_PATH'} = "/app/oracle/product/10gClient/lib";
## Global variables for database schema names
$CGAP_SCHEMA = RUNNING_CGAP_SCHEMA;
$CGAP_SCHEMA2 = "";
$CMAP_SCHEMA = "cmap";
$RFLP_SCHEMA = "rflp";
use constant DB_USER => "web";
use constant DB_PASS => "readonly";
use constant DB_INSTANCE => "cgprod";
## use constant DB_INSTANCE => "lpg";
##use constant GENE_SERVER_PORT => "8001";
##use constant LIBRARY_SERVER_PORT => "8004";
use constant GXS_SERVER_PORT => "8005";
use constant GENE_SERVER_PORT => "0000";
use constant LIBRARY_SERVER_PORT => "0000";
##use constant GXS_SERVER_PORT => "0000";
use constant CYT_SERVER_PORT => "8002";
use constant BLAST_QUERY_SERVER_PORT => "8003";
use constant GL_SERVER_PORT => "8006";
use constant PATHWAY_SERVER_PORT => "8007";
use constant MICROARRAY_SERVER_PORT => "8008";
## use constant INIT_DATA_HOME => "/share/content/CGAP/data/";
## use constant KEGG_DATA_HOME => "/share/content/CGAP/data/";
## use constant INIT_SAGE_DATA_HOME => "/share/content/CGAP/data/";
use constant INIT_DATA_HOME => "/cgap/schaefec/current/CGAP/data/";
use constant KEGG_DATA_HOME => "/cgap/schaefec/current/CGAP/data/";
use constant INIT_SAGE_DATA_HOME => "/cgap/schaefec/current/SAGE/data/";
use constant HS_GL_DATA => INIT_DATA_HOME . "Hs_gl.dat";
use constant MM_GL_DATA => INIT_DATA_HOME . "Mm_gl.dat";
## use constant CACHE_ROOT => INIT_DATA_HOME . "cache/cache/";
use constant CACHE_ROOT => INIT_DATA_HOME . "cache/";
## use constant CACHE_ROOT => "/tmp/cache/";
use constant CACHE_ID_FILE => CACHE_ROOT . "cache_id";
use constant KEGG_ARCFILE => KEGG_DATA_HOME . "Arc.dat";
use constant KEGG_NODEFILE => KEGG_DATA_HOME . "Node.dat";
use constant KEGG_GENEFILE => KEGG_DATA_HOME . "Gene_Product.dat";
use constant KEGG_PATHFILE => KEGG_DATA_HOME . "Pathway.dat";
use constant KEGG_NAMEFILE => KEGG_DATA_HOME . "Pathway_name.dat";
use constant KEGG_COORDFILE => KEGG_DATA_HOME . "KeggCoords.dat";
use constant KEGG_ENZYME => KEGG_DATA_HOME . "KeggEnzymes.dat";
use constant KEGG_COMPOUND => KEGG_DATA_HOME . "entry_table";
use constant GXS_CACHE_PREFIX => "GXS";
use constant XP_CACHE_PREFIX => "XP";
use constant GL_CACHE_PREFIX => "GL";
use constant MICROARRAY_CACHE_PREFIX => "MC";
use constant LICR_CACHE_PREFIX => "LICR";
use constant SDGED_CACHE_PREFIX => "SDGED";
use constant HS_GXS_DATA => INIT_DATA_HOME . "Hs_gxs.dat";
use constant MM_GXS_DATA => INIT_DATA_HOME . "Mm_gxs.dat";
## use constant HS_UG_BLAST => INIT_DATA_HOME . "Hs.seq.all";
## use constant MM_UG_BLAST => INIT_DATA_HOME . "Mm.seq.all";
use constant HS_UG_BLAST => INIT_DATA_HOME . "Hs.seq.all_for_blast";
use constant MM_UG_BLAST => INIT_DATA_HOME . "Mm.seq.all_for_blast";
use constant NCI60_RAW => INIT_DATA_HOME . "discover.raw";
use constant NCI60_STATS => INIT_DATA_HOME . "discover.stats";
use constant NCI60_VIEW => INIT_DATA_HOME . "discover.view";
use constant SAGE_RAW => INIT_DATA_HOME . "sage.raw";
use constant SAGE_STATS => INIT_DATA_HOME . "sage.stats";
use constant SAGE_VIEW => INIT_DATA_HOME . "sage.view";
use constant SAGE_GROUP_RAW => INIT_DATA_HOME . "sage_group.raw";
use constant SAGE_GROUP_STATS => INIT_DATA_HOME . "sage_group.stats";
use constant SAGE_GROUP_VIEW => INIT_DATA_HOME . "sage_group.view";
use constant NOVARTIS_RAW => INIT_DATA_HOME . "novartis.raw";
use constant NOVARTIS_STATS => INIT_DATA_HOME . "novartis.stats";
use constant NOVARTIS_VIEW => INIT_DATA_HOME . "novartis.view";
use constant SAGEFREQ => INIT_SAGE_DATA_HOME . "sagefreq.dat";
# Perl equivalents of Zope dtml-var's BASE and IMG_DIR
use constant BASE => "";
use constant IMG_DIR => "/images";
##use constant BASE => "/CGAP";
##use constant IMG_DIR => "/CGAP/images";
use constant KEGG_DIR => "http://cgap-prot.nci.nih.gov/KEGG";
use constant SAFE_IPS =>
"127.0.0.1," . ## localhost
"128.231.202.171," . ## lpgfs
"137.187.66.221," . ## lpgfs new
"156.40.133.243," . ## cbiodev24
"137.187.66.205," . ## cbiodev104
"137.187.66.207," . ## cbioapp101
"137.187.66.209," . ## cbioapp102
"137.187.66.195," . ## cbioapp104
"137.187.66.222," . ## ncicbstarfish
"137.187.67.76," . ## ncicbstarfish
"137.187.67.77," . ## ncicbstarfish
"137.187.67.78" ; ## ncicbstarfish
######################################################################
1;