Allow users to select from a set of automated DWI brain masking tools: - synthstrip on T2/baseline/B0 https://surfer.nmr.mgh.harvard.edu/docs/synthstrip/ (needs specification of appropriate FreeSurfer installation, similar to the current specification of FSL for bet) - synthstrip on FA - antspynet - brainextraction (FA for FA, alternatively either T2 or T2infant for baseline/B0) - https://github.com/pnlbwh/CNN-Diffusion-MRIBrain-Segmentation - allow for future other extensions
Allow users to select from a set of automated DWI brain masking tools: