file-curator/manifest.json at mrrc · NPACore/file-curator · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
{
  "author": "Flywheel",
  "cite": "",
  "command": "python run.py",
  "config": {
    "debug": {
      "default": false,
      "description": "Log debug messages",
      "type": "boolean"
    },
    "tag": {
      "default": "",
      "description": "The tag to be added on input file upon run completion.",
      "type": "string"
    }
  },
  "custom": {
    "flywheel": {
      "classification": {
        "species": [
          "Phantom",
          "Human",
          "Animal"
        ],
        "organ": [
          "Any"
        ],
        "therapeutic_area": [
          "Any"
        ],
        "modality": [
          "Any"
        ],
        "function": [
          "Utility"
        ]
      },
      "show-job": true,
      "suite": "Utility"
    },
    "gear-builder": {
      "category": "converter",
      "image": "flywheel/file-curator:0.4.1"
    }
  },
  "description": "Curates a given file, to be used as a gear rule",
  "environment": {
    "PATH": "/venv/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin",
    "LANG": "C.UTF-8",
    "GPG_KEY": "7169605F62C751356D054A26A821E680E5FA6305",
    "PYTHON_VERSION": "3.13.1",
    "PYTHON_PIP_VERSION": "22.0.4",
    "PYTHON_SETUPTOOLS_VERSION": "57.5.0",
    "PYTHON_GET_PIP_URL": "https://github.com/pypa/get-pip/raw/1a96dc5acd0303c4700e02655aefd3bc68c78958/public/get-pip.py",
    "PYTHON_GET_PIP_SHA256": "d1d09b0f9e745610657a528689ba3ea44a73bd19c60f4c954271b790c71c2653",
    "FLYWHEEL": "/flywheel/v0",
    "PWD": "/flywheel/v0",
    "EDITOR": "micro",
    "TZ": "UTC",
    "UV_NO_CACHE": "1",
    "VIRTUAL_ENV": "/venv",
    "EGET_BIN": "/opt/bin",
    "PYTHONPATH": "/venv/lib/python/site-packages",
    "SHLVL": "1",
    "PYTHON_SHA256": "9cf9427bee9e2242e3877dd0f6b641c1853ca461f39d6503ce260a59c80bf0d9",
    "COMMIT_SHA": "078493bc",
    "COMMIT_REF": "main",
    "BUILD_TIME": "2024-12-12T14:22:38Z",
    "CI_JOB_URL": "https://gitlab.com/flywheel-io/tools/img/python/-/jobs/8624150562"
  },
  "inputs": {
    "file-input": {
      "base": "file",
      "description": "File to curate",
      "optional": false
    },
    "curator": {
      "base": "file",
      "description": "A python implementation of the FileCurator class (see https://flywheel-io.gitlab.io/public/gear-toolkit/flywheel_gear_toolkit/utils/#curator for more details).",
      "optional": false,
      "type": {
        "enum": [
          "source code"
        ]
      }
    },
    "additional-input-one": {
      "base": "file",
      "description": "An optional input for curation.",
      "optional": true
    },
    "additional-input-two": {
      "base": "file",
      "description": "An optional input for curation.",
      "optional": true
    },
    "api-key": {
      "base": "api-key",
      "read-only": false
    }
  },
  "label": "File Curator",
  "license": "MIT",
  "maintainer": "Flywheel <support@flywheel.io>",
  "name": "file-curator",
  "source": "https://gitlab.com/flywheel-io/scientific-solutions/gears/file-curator",
  "url": "https://gitlab.com/flywheel-io/scientific-solutions/gears/file-curator",
  "version": "0.4.1"
}