DESCRIPTION

Package: GeomxTools
Title: NanoString GeoMx Tools
Description: Tools for NanoString Technologies GeoMx Technology.  Package provides functions for reading in DCC and
         PKC files based on an ExpressionSet derived object.  Normalization and QC functions are also included.
Version: 3.9.1
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")),
	     person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")), 
             person("Zhi", "Yang", role = c("aut")),
             person("Ronalyn", "Vitancol", email = "rvitancol@nanostring.com", role = c("aut")),
             person("David", "Henderson", role = c("aut")))
Depends: R (>= 3.6), Biobase, NanoStringNCTools, S4Vectors
Imports: BiocGenerics, rjson, readxl, EnvStats, reshape2, methods, 
         utils, stats, data.table, lmerTest, dplyr, stringr,
         grDevices, graphics, GGally, rlang, ggplot2, SeuratObject
Suggests: 
    rmarkdown,
    knitr,
    testthat (>= 3.0.0),
    parallel,
    ggiraph,
    Seurat,
    SpatialExperiment (>= 1.4.0),
    SpatialDecon,
    patchwork 
License: MIT
Collate: DccMetadata.R
         NanoStringGeoMxSet-class.R
         NanoStringGeoMxSet-validity.R
         NanoStringGeoMxSet-accessors.R
         NanoStringGeoMxSet-qc.R
         NanoStringGeoMxSet-autoplot.R
         NanoStringGeoMxSet-aggregate.R
         NanoStringGeoMxSet-signatures.R
         NanoStringGeoMxSet-normalize.R
         NanoStringGeoMxSet-de.R
         coercions.R
         readDccFile.R
         readPKCFile.R
         readNanoStringGeoMxSet.R
         writeNanoStringGeoMxSet.R
         utils.R
         outliersFunctions.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport, 
           Transcriptomics, Proteomics, mRNAMicroarray, 
           ProprietaryPlatforms, RNASeq, Sequencing, ExperimentalDesign, 
           Normalization, Spatial
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3