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I am using nextDenovo to assamble genome with ONT reads.
The long reads usually have low base quality.
And I wonder how these sequences will be handled in Nextdenove? Discard or correct?
The text was updated successfully, but these errors were encountered:
Nextdenovo discards reads with low mapping coverage or clips regions of low mapping coverage in reads, and low-quality reads generally have lower mapping coverage.
I am using nextDenovo to assamble genome with ONT reads.
The long reads usually have low base quality.
And I wonder how these sequences will be handled in Nextdenove? Discard or correct?
The text was updated successfully, but these errors were encountered: