From 229fb86f7295ba239e5ca5716cfbcc2cf143fc5e Mon Sep 17 00:00:00 2001
From: Niinleslie <705172894@qq.com>
Date: Fri, 11 Jun 2021 17:13:03 +0800
Subject: [PATCH] add citation

---
 DESCRIPTION          |  3 ++-
 inst/CITATION.txt    | 20 ++++++++++++++++++++
 vignettes/MesKit.Rmd | 11 +++++++----
 3 files changed, 29 insertions(+), 5 deletions(-)
 create mode 100644 inst/CITATION.txt

diff --git a/DESCRIPTION b/DESCRIPTION
index 5b89626..44f56eb 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,8 @@
 Package: MesKit
 Type: Package
 Title: A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations
-Version: 1.3.0
+Version: 1.1.2
+Date: 2021-06-11
 Authors@R: c(
   person('Mengni', 'Liu',   email = "niinleslie@gmail.com", role = c('aut', 'cre'), comment = c(ORCID = '0000-0001-9938-9973')),
   person('Jianyu', 'Chen', email = 'chenjy327@mail2.sysu.edu.cn', role = c('aut', 'ctb'), comment = c(ORCID = '0000-0003-4491-9265')),
diff --git a/inst/CITATION.txt b/inst/CITATION.txt
new file mode 100644
index 0000000..c9447ae
--- /dev/null
+++ b/inst/CITATION.txt
@@ -0,0 +1,20 @@
+citHeader("MesKit can be cited as:")
+
+citEntry(
+   entry="article",
+   title = "MesKit: a tool kit for dissecting cancer evolution of multi-region tumor biopsies through somatic alterations.",
+   author = personList(as.person("Mengni Liu"),
+                       as.person("Jianyu Chen"),
+                       as.person("Xin Wang"),
+                       as.person("Chengwei Wang"),
+                       as.person("Xiaolong Zhang"),
+                       as.person("Yubin Xie"),
+                       as.person("Zhixiang Zuo"),
+                       as.person("Jian Ren"),
+                       as.person(" Qi Zhao")
+                       ),
+   journal = "GigaScience",
+   year = 2021,
+   doi = "https://doi.org/10.1093/gigascience/giab036",
+   textVersion = "Mengni Liu, Jianyu Chen, Xin Wang, Chengwei Wang, Xiaolong Zhang, Yubin Xie, Zhixiang Zuo, Jian Ren, Qi Zhao, MesKit: a tool kit for dissecting cancer evolution of multi-region tumor biopsies through somatic alterations, GigaScience, Volume 10, Issue 5, May 2021, giab036, https://doi.org/10.1093/gigascience/giab03"
+)
\ No newline at end of file
diff --git a/vignettes/MesKit.Rmd b/vignettes/MesKit.Rmd
index 0a77543..5cbf449 100644
--- a/vignettes/MesKit.Rmd
+++ b/vignettes/MesKit.Rmd
@@ -74,10 +74,13 @@ Intra-tumor heterogeneity (ITH) is now thought to be a key factor that results i
 
 #### 1.1 Citation
 
-In R console, enter `citation("MesKit")`.  
-  
-_**MesKit: A Tool Kit for Dissecting Cancer Evolution of Multi-region Tumor Biopsies through Somatic Alterations (In production)**
-   
+If you find this tool useful, please cite:
+
+------------------------------------------------------------------------
+
+***Mengni Liu, Jianyu Chen, Xin Wang, Chengwei Wang, Xiaolong Zhang, Yubin Xie, Zhixiang Zuo, Jian Ren, Qi Zhao, MesKit: a tool kit for dissecting cancer evolution of multi-region tumor biopsies through somatic alterations, GigaScience, Volume 10, Issue 5, May 2021, giab036, https://doi.org/10.1093/gigascience/giab036***
+
+------------------------------------------------------------------------   
    
 ### 2. Prepare input Data