spurious diffusive effect correction #123
Workflow file for this run
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| name: LBPM CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [master, dev] | |
| pull_request: | |
| branches: [master, dev] | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| env: | |
| MPI_VERSION: "4.1.8" | |
| ZLIB_VERSION: "1.3.2" | |
| HDF5_VERSION: "1.14.6" | |
| MPI_DIR: ${{ github.workspace }}/deps/openmpi | |
| LBPM_ZLIB_DIR: ${{ github.workspace }}/deps/zlib | |
| LBPM_HDF5_DIR: ${{ github.workspace }}/hdf5 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| path: LBPM | |
| - name: Install build tools | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y build-essential cmake wget tar | |
| - name: Cache compiled deps (OpenMPI, zlib, HDF5) | |
| id: cache-deps | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| deps/openmpi | |
| deps/zlib | |
| deps/hdf5 | |
| key: ${{ runner.os }}-lbpm-deps-mpi${{ env.MPI_VERSION }}-zlib${{ env.ZLIB_VERSION }}-hdf5${{ env.HDF5_VERSION }} | |
| restore-keys: | | |
| ${{ runner.os }}-lbpm-deps- | |
| - name: Build OpenMPI | |
| if: steps.cache-deps.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-${MPI_VERSION}.tar.gz | |
| tar -xzf openmpi-${MPI_VERSION}.tar.gz | |
| cd openmpi-${MPI_VERSION} | |
| ./configure --prefix="${MPI_DIR}" | |
| make -j | |
| make install | |
| - name: Build zlib | |
| if: steps.cache-deps.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://zlib.net/zlib-${ZLIB_VERSION}.tar.gz | |
| tar -xzf zlib-${ZLIB_VERSION}.tar.gz | |
| cd zlib-${ZLIB_VERSION} | |
| ./configure --prefix="${LBPM_ZLIB_DIR}" | |
| make -j | |
| make install | |
| - name: Build HDF5 (parallel) | |
| if: steps.cache-deps.outputs.cache-hit != 'true' | |
| run: | | |
| wget -q https://sourceforge.net/projects/hdf5.mirror/files/hdf5_${HDF5_VERSION}/hdf5-${HDF5_VERSION}.tar.gz/download -O hdf5-${HDF5_VERSION}.tar.gz | |
| tar -xzf hdf5-${HDF5_VERSION}.tar.gz | |
| cd hdf5-${HDF5_VERSION} | |
| CC="${MPI_DIR}/bin/mpicc" CXX="${MPI_DIR}/bin/mpicxx" CXXFLAGS="-fPIC -O3 -std=c++14" \ | |
| ./configure --prefix="${LBPM_HDF5_DIR}" --enable-parallel --enable-shared --with-zlib="${LBPM_ZLIB_DIR}" | |
| make -j | |
| make install | |
| # Ensure the cached/restored MPI is on PATH | |
| - name: Add MPI to PATH | |
| run: echo "${MPI_DIR}/bin" >> $GITHUB_PATH | |
| - name: Configure CMake | |
| run: | | |
| cmake -S LBPM -B build \ | |
| -D USE_SILO=0 \ | |
| -D USE_TIMER=0 \ | |
| -D USE_CUDA=0 \ | |
| -D CMAKE_BUILD_TYPE=Release \ | |
| -D CMAKE_C_COMPILER:PATH="${MPI_DIR}/bin/mpicc" \ | |
| -D CMAKE_CXX_COMPILER:PATH="${MPI_DIR}/bin/mpicxx" \ | |
| -D MPI_CXX_COMPILER="${MPI_DIR}/bin/mpicxx" \ | |
| -D CMAKE_C_FLAGS="-fPIC" \ | |
| -D CMAKE_CXX_FLAGS="-fPIC" \ | |
| -D CMAKE_CXX_STD=14 \ | |
| -D TEST_MAX_PROCS=1 \ | |
| -D HDF5_DIRECTORY="${LBPM_HDF5_DIR}" | |
| - name: build and make | |
| run: | | |
| cd build | |
| make install | |
| - name: tests | |
| run: | | |
| ctest --test-dir build --output-on-failure |