diff --git a/README.md b/README.md index 395ba77..6ec7659 100644 --- a/README.md +++ b/README.md @@ -9,15 +9,15 @@ This tutorial focuses on a subset of the [Data Carpentry Genomics workshop curri ## Get Tutorial Files -Logged into the submit node, we will run the tutorial command, that will +Logged into the submit node, we will download the tutorial materials. This will create a folder for our analysis, as well as some sample files. ``` -tutorial bwa +git clone https://github.com/OSGConnect/tutorial-bwa ``` ## Install and Prepare BWA -First, we need to install BWA, also called Burrows-Wheeler Aligner. To do this, we will create and navigate to a new folder in our /home directory called `software`. We will then follow the developer's instructions (https://github.com/lh3/bwa) for using `git clone` to clone the software and then build the tool using `make`. +First, we need to install BWA, also called Burrows-Wheeler Aligner. To do this, we will create and navigate to a new folder in our `/home` directory called `software`. We will then follow the developer's instructions (https://github.com/lh3/bwa) for using `git clone` to clone the software and then build the tool using `make`. ``` cd ~/tutorial-bwa @@ -56,7 +56,7 @@ cd ~/tutorial-bwa/software tar -czvf bwa.tar.gz bwa ``` -Checking the size of this compressed tarball using `ls -lh bwa.tar.gz` reveals the file is approximately 4MB. The tarball should stay in /home. +Checking the size of this compressed tarball using `ls -lh bwa.tar.gz` reveals the file is approximately 4MB. The tarball should stay in `/home`. ## Download Data to Analyze @@ -80,6 +80,7 @@ ls -lh data/trimmed_fastq_small ``` Once everything is downloaded, make sure you're still in the `tutorial-bwa` directory. + ``` cd ~/tutorial-bwa ```