Update environment

Author: servilla

environment-min.yml

@@ -6,7 +6,7 @@ dependencies:
   - fabric
   - psycopg2
   - click
-  - python=3.11
+  - python
   - requests
   - sqlalchemy=1.4.46
   - daiquiri

environment.yml

@@ -3,79 +3,81 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - bcrypt=4.3.0=py311hdae7d1d_1
-  - brotli-python=1.1.0=py311hfdbb021_3
-  - bzip2=1.0.8=h4bc722e_7
-  - ca-certificates=2025.6.15=hbd8a1cb_0
-  - certifi=2025.6.15=pyhd8ed1ab_0
-  - cffi=1.17.1=py311hf29c0ef_0
-  - charset-normalizer=3.4.2=pyhd8ed1ab_0
-  - click=8.2.1=pyh707e725_0
-  - colorama=0.4.6=pyhd8ed1ab_1
-  - cryptography=45.0.4=py311hafd3f86_0
-  - cyrus-sasl=2.1.28=hd9c7081_0
-  - daiquiri=3.0.0=pyhd3deb0d_0
-  - decorator=5.2.1=pyhd8ed1ab_0
-  - deprecated=1.2.18=pyhd8ed1ab_0
-  - exceptiongroup=1.3.0=pyhd8ed1ab_0
-  - fabric=3.2.2=pyhd8ed1ab_1
-  - greenlet=3.2.3=py311hfdbb021_0
-  - h2=4.2.0=pyhd8ed1ab_0
-  - hpack=4.1.0=pyhd8ed1ab_0
-  - hyperframe=6.1.0=pyhd8ed1ab_0
-  - icu=75.1=he02047a_0
-  - idna=3.10=pyhd8ed1ab_1
-  - iniconfig=2.0.0=pyhd8ed1ab_1
-  - invoke=2.2.0=pyhd8ed1ab_1
-  - keyutils=1.6.1=h166bdaf_0
-  - krb5=1.21.3=h659f571_0
-  - ld_impl_linux-64=2.43=h1423503_5
-  - libedit=3.1.20250104=pl5321h7949ede_0
-  - libexpat=2.7.0=h5888daf_0
-  - libffi=3.4.6=h2dba641_1
-  - libgcc=15.1.0=h767d61c_2
-  - libgcc-ng=15.1.0=h69a702a_2
-  - libgomp=15.1.0=h767d61c_2
-  - liblzma=5.8.1=hb9d3cd8_2
-  - libnsl=2.0.1=hd590300_0
-  - libntlm=1.8=hb9d3cd8_0
-  - libpq=17.5=h27ae623_0
-  - libsodium=1.0.20=h4ab18f5_0
-  - libsqlite=3.50.1=hee588c1_0
-  - libstdcxx=15.1.0=h8f9b012_2
-  - libstdcxx-ng=15.1.0=h4852527_2
-  - libuuid=2.38.1=h0b41bf4_0
-  - libxcrypt=4.4.36=hd590300_1
-  - libzlib=1.3.1=hb9d3cd8_2
-  - ncurses=6.5=h2d0b736_3
-  - openldap=2.6.10=he970967_0
-  - openssl=3.5.0=h7b32b05_1
-  - packaging=25.0=pyh29332c3_1
-  - paramiko=3.5.1=pyhd8ed1ab_0
-  - pip=25.1.1=pyh8b19718_0
-  - pluggy=1.6.0=pyhd8ed1ab_0
-  - psycopg2=2.9.10=py311h83e8966_0
-  - pycparser=2.22=pyh29332c3_1
-  - pygments=2.19.1=pyhd8ed1ab_0
-  - pynacl=1.5.0=py311h9ecbd09_4
-  - pysocks=1.7.1=pyha55dd90_7
-  - pytest=8.4.1=pyhd8ed1ab_0
-  - python=3.11.13=h9e4cc4f_0_cpython
-  - python-json-logger=2.0.7=pyhd8ed1ab_0
-  - python_abi=3.11=7_cp311
-  - readline=8.2=h8c095d6_2
-  - requests=2.32.4=pyhd8ed1ab_0
-  - setuptools=80.9.0=pyhff2d567_0
-  - six=1.17.0=pyhd8ed1ab_0
-  - sqlalchemy=1.4.46=py311h2582759_0
-  - tk=8.6.13=noxft_hd72426e_102
-  - tomli=2.2.1=pyhd8ed1ab_1
-  - typing_extensions=4.14.0=pyhe01879c_0
-  - tzdata=2025b=h78e105d_0
-  - urllib3=2.4.0=pyhd8ed1ab_0
-  - wheel=0.45.1=pyhd8ed1ab_1
-  - wrapt=1.17.2=py311h9ecbd09_0
-  - zstandard=0.23.0=py311h9ecbd09_2
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - bcrypt=4.3.0
+  - brotli-python=1.1.0
+  - bzip2=1.0.8
+  - ca-certificates=2025.6.15
+  - certifi=2025.6.15
+  - cffi=1.17.1
+  - charset-normalizer=3.4.2
+  - click=8.2.1
+  - colorama=0.4.6
+  - cryptography=45.0.4
+  - cyrus-sasl=2.1.28
+  - daiquiri=3.0.0
+  - decorator=5.2.1
+  - deprecated=1.2.18
+  - exceptiongroup=1.3.0
+  - fabric=3.2.2
+  - greenlet=3.2.3
+  - h2=4.2.0
+  - hpack=4.1.0
+  - hyperframe=6.1.0
+  - icu=75.1
+  - idna=3.10
+  - iniconfig=2.0.0
+  - invoke=2.2.0
+  - keyutils=1.6.1
+  - krb5=1.21.3
+  - ld_impl_linux-64=2.43
+  - libedit=3.1.20250104
+  - libexpat=2.7.0
+  - libffi=3.4.6
+  - libgcc=15.1.0
+  - libgcc-ng=15.1.0
+  - libgomp=15.1.0
+  - liblzma=5.8.1
+  - libnsl=2.0.1
+  - libntlm=1.8
+  - libpq=17.5
+  - libsodium=1.0.20
+  - libsqlite=3.50.2
+  - libstdcxx=15.1.0
+  - libstdcxx-ng=15.1.0
+  - libuuid=2.38.1
+  - libxcrypt=4.4.36
+  - libzlib=1.3.1
+  - ncurses=6.5
+  - openldap=2.6.10
+  - openssl=3.5.1
+  - packaging=25.0
+  - paramiko=3.5.1
+  - pip=25.1.1
+  - pluggy=1.6.0
+  - psycopg2=2.9.10
+  - pycparser=2.22
+  - pygments=2.19.2
+  - pynacl=1.5.0
+  - pysocks=1.7.1
+  - pytest=8.4.1
+  - python=3.11.13
+  - python-json-logger=2.0.7
+  - python_abi=3.11
+  - readline=8.2
+  - requests=2.32.4
+  - setuptools=80.9.0
+  - six=1.17.0
+  - sqlalchemy=1.4.46
+  - tk=8.6.13
+  - tomli=2.2.1
+  - typing_extensions=4.14.0
+  - tzdata=2025b
+  - urllib3=2.5.0
+  - wheel=0.45.1
+  - wrapt=1.17.2
+  - zstandard=0.23.0
+  - pip:
+      - pastaplus-prune==2024.1.1
 prefix: /home/servilla/miniconda3/envs/prune

requirements.txt

@@ -20,11 +20,12 @@ iniconfig==2.0.0
 invoke==2.2.0
 packaging==25.0
 paramiko==3.5.1
+pastaplus.prune==2024.1.1
 pip==25.1.1
 pluggy==1.6.0
 psycopg2==2.9.10
 pycparser==2.22
-Pygments==2.19.1
+Pygments==2.19.2
 PyNaCl==1.5.0
 PySocks==1.7.1
 pytest==8.4.1
@@ -35,7 +36,7 @@ six==1.17.0
 SQLAlchemy==1.4.46
 tomli==2.2.1
 typing_extensions==4.14.0
-urllib3==2.4.0
+urllib3==2.5.0
 wheel==0.45.1
 wrapt==1.17.2
 zstandard==0.23.0