changed website to new theme

Author: Skender Gashi

.gitignore

@@ -79,3 +79,4 @@ Temporary Items
 
 ### IDEs ###
 .idea/
+.vscode/

Gemfile.lock

@@ -1,7 +1,7 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    addressable (2.8.4)
+    addressable (2.8.5)
       public_suffix (>= 2.0.2, < 6.0)
     autoprefixer-rails (10.4.13.0)
       execjs (~> 2)
@@ -39,7 +39,7 @@ GEM
       forwardable-extended (~> 2.5)
     ffi (1.15.5)
     forwardable-extended (2.6.0)
-    google-protobuf (3.23.4-aarch64-linux)
+    google-protobuf (3.24.0-aarch64-linux)
     http_parser.rb (0.8.0)
     i18n (1.14.1)
       concurrent-ruby (~> 1.0)
@@ -104,7 +104,7 @@ GEM
     safe_yaml (1.0.5)
     sass (3.7.4)
       sass-listen (~> 4.0.0)
-    sass-embedded (1.64.1-aarch64-linux-gnu)
+    sass-embedded (1.64.2-aarch64-linux-gnu)
       google-protobuf (~> 3.23)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)

README.md

@@ -15,7 +15,7 @@ We use **docker** to *prevent version* and *system differences*. So please, espe
 #### Run this in your console to update your dependencies
 
 ```bash
-docker run --rm -v "$PWD":/usr/src/app -w /usr/src/app ruby:3.2.2 bash -c "bundle config set --local path '/usr/src/app/vendor' && bundle install"
+docker-compose -f docker-compose-bundle.yml up
 ```
 
 ### Start the live preview of the page
@@ -25,7 +25,7 @@ docker run --rm -v "$PWD":/usr/src/app -w /usr/src/app ruby:3.2.2 bash -c "bundl
 #### Run this in your console to start the local preview
 
 ```bash
-docker run --rm -p 35729:35729 -p 4000:4000 -v "$PWD":/usr/src/app -w /usr/src/app ruby:3.2.2 bash -c "bundle config set --local path '/usr/src/app/vendor' && bundle exec jekyll serve --livereload --host=0.0.0.0"
+docker-compose up
 ```
 
 ## III. Troubleshooting
@@ -49,7 +49,7 @@ If the live preview fails and you don't know the cause, follow these steps:
     - either close the program(s) that need(s) the port(s)
     - or specify another port
 
-    If you want to specify another port, append one of the args to the bash script that the docker container will run:
+    If you want to specify another port go to the docker compose file, append one of the args to the bash script that the docker container will run:
 
     - `--port [YOUR PORT]` (the port where the page is accessible at)
     - `--livereload-port [YOUR PORT]` (the port where the live reload script is accessible at)

_codes/libridc.md

@@ -1,11 +1,12 @@
 ---
 layout: page_code
+hide_hero: true
 title: "libridc"
 date: 2015-06-10 16:45 +0200
 updated: 2016-06-10 11:45:00 +0100
 navbar: Codes
 subnavbar: libridc
-logo: 
+logo:
 code_url: http://mathgeek.us/software.html
 language: C++
 github_repo: "ongbw/ridc"
@@ -23,7 +24,7 @@ developers:
 short_desc: A C++ library for RIDC.
 ---
 
-A modern C++ library for the RIDC algorithm. 
+A modern C++ library for the RIDC algorithm.
 
 The libridc is a C++ library which implements the parallel-in-time [RIDC](/methods/ridc.html)
 methods for solving systems of ODEs.

_codes/pararealf90.md

@@ -1,10 +1,11 @@
 ---
 layout: page_code
+hide_hero: true
 title: "PararealF90"
 date: 2015-09-24 16:45 +0200
 navbar: Codes
 subnavbar: pararealf90
-logo: 
+logo:
 code_url: https://github.com/Parallel-in-Time/PararealF90
 language: F90
 github_repo: "Parallel-in-Time/PararealF90"

_codes/pfasst.md

@@ -1,11 +1,12 @@
 ---
 layout: page_code
+hide_hero: true
 title: "PFASST++"
 date: 2014-06-15 16:45 +0200
 updated: 2015-06-03 10:30:00 +0200
 navbar: Codes
 subnavbar: pfasst
-logo: 
+logo:
 code_url: https://github.com/Parallel-in-Time/PFASST
 language: C++
 github_repo: "Parallel-in-Time/PFASST"
@@ -48,12 +49,12 @@ developers:
 short_desc: A C++ library for SDC, MLSDC and PFASST.
 ---
 
-A modern C++ library for the PFASST algorithm. 
+A modern C++ library for the PFASST algorithm.
 
-The PFASST project is a C++ implementation of the parallel full approximation 
-scheme in space and time (PFASST {% cite EmmettMinion2012 %}) algorithm, which in turn is a time-parallel 
+The PFASST project is a C++ implementation of the parallel full approximation
+scheme in space and time (PFASST {% cite EmmettMinion2012 %}) algorithm, which in turn is a time-parallel
 algorithm for solving ODEs and PDEs.
-It also contains basic implementations of the spectral deferred correction (SDC) 
+It also contains basic implementations of the spectral deferred correction (SDC)
 and multi-level spectral deferred correction (MLSDC) algorithms.
 
 {% bibliography --cited %}

_codes/pinttf.md

@@ -1,29 +1,30 @@
 ---
 layout: page_code
+hide_hero: true
 title: "PinT-TF"
 date: 2018-03-09 13:02 +0900
-updated: 2018-03-09 13:02 +0900 
+updated: 2018-03-09 13:02 +0900
 navbar: Codes
-subnavbar: pinttf 
-logo: 
+subnavbar: pinttf
+logo:
 code_url: https://github.com/xjtju/PinT
-language: C++,F90  
-license: MIT 
+language: C++,F90
+license: MIT
 github_repo: "xjtju/PinT"
 developers:
-  - name: Jian Xiao 
-    email: [email protected] 
+  - name: Jian Xiao
+    email: [email protected]
     lead_developer: true
-  - name:  Mikio Iizuka 
-    email: [email protected] 
-  - name: Kenji Ono 
-    email: [email protected] 
-short_desc: A performance and convergency testing framework for Parallel-in-Time methods, currently only for Parareal. 
+  - name:  Mikio Iizuka
+    email: [email protected]
+  - name: Kenji Ono
+    email: [email protected]
+short_desc: A performance and convergency testing framework for Parallel-in-Time methods, currently only for Parareal.
 ---
-In order to quickly explore the applicability of the [Parareal](/methods/parareal.html) algorithm, we have built the very light-weighted framework. As a path finder of applying the parareal algorithm to real-world computing problems, it provides a basic space-time parallel and performance profiling functionalities. 
+In order to quickly explore the applicability of the [Parareal](/methods/parareal.html) algorithm, we have built the very light-weighted framework. As a path finder of applying the parareal algorithm to real-world computing problems, it provides a basic space-time parallel and performance profiling functionalities.
 
 The framework implemented the Parareal skeleton on an uniform mesh(1D/2D/3D), and some common linear solvers and time integrators, including SOR, BiCGStab, Newton-Raphson etc. For running a test, You only need to provide problem-specific stencil code, and then choose a proper combination of solvers. All the parameters controlling the space-time domain division, convergence check, coarsening factor etc. can be predefined through an .INI file, easily be changed and tuned. If some default function cannot be able to support some specific problem, it can be easily be extended by writting a new implementation in problem-specific sub classes.
 
-The framework is mainly written by C++ for good template and extension, most BLAS related calculations is performed by Fortran for performance reason and easy matrix manipulation. It is very light-weighted, the only necessary third library is [inih](https://github.com/benhoyt/inih), a small but excellent .INI file parser. HDF5 output and performance monitoring are also optionally supported by [HDF5](https://www.hdfgroup.org/HDF5) library and [PMLlib](https://github.com/avr-aics-riken/PMlib) respectively.      
+The framework is mainly written by C++ for good template and extension, most BLAS related calculations is performed by Fortran for performance reason and easy matrix manipulation. It is very light-weighted, the only necessary third library is [inih](https://github.com/benhoyt/inih), a small but excellent .INI file parser. HDF5 output and performance monitoring are also optionally supported by [HDF5](https://www.hdfgroup.org/HDF5) library and [PMLlib](https://github.com/avr-aics-riken/PMlib) respectively.
 
-At current release, the code has provided two examples for heat equation and Allen-Cahn equation. We will continue to improve the generality and adaptability of it.  
+At current release, the code has provided two examples for heat equation and Allen-Cahn equation. We will continue to improve the generality and adaptability of it.

_codes/pymgrit.md

@@ -1,10 +1,11 @@
 ---
 layout: page_code
+hide_hero: true
 title: "PyMGRIT"
 date: 2020-10-26 19:40:00 +0200
 navbar: Codes
 subnavbar: pymgrit
-logo: 
+logo:
 code_url: https://pymgrit.github.io/pymgrit/
 language: Python
 github_repo: "pymgrit/pymgrit"

_codes/pysdc.md

@@ -1,10 +1,11 @@
 ---
 layout: page_code
+hide_hero: true
 title: "pySDC"
 date: 2015-06-03 10:45:00 +0200
 navbar: Codes
 subnavbar: pysdc
-logo: 
+logo:
 code_url: http://www.parallelintime.org/pySDC/
 language: Python
 github_repo: "Parallel-in-Time/pySDC"

_codes/sweet.md

@@ -1,10 +1,11 @@
 ---
 layout: page_code
+hide_hero: true
 title: SWEET
 date: 2018-04-29 11:45 +0200
 navbar: Codes
 subnavbar: sweet
-logo: 
+logo:
 code_url: https://schreiberx.github.io/sweetsite/
 language: C++
 developers:
@@ -21,4 +22,4 @@ Development written in C++ which allows to study PinT time integration and compa
 
 This C++ development supports the development of simulations using global spectral methods.
 The main reason for using spectral methods is to reduce or fully avoid discretization errors in space and focus purely on time-integration issues for ODEs and PDEs.
-The PinT methods Parareal, rational approximation of exponential integrators (REXI), ML-SDC (based on libPFASST), PFASST were studied so far using ODEs, the Burgers, advection and shallow-water equations. 
+The PinT methods Parareal, rational approximation of exponential integrators (REXI), ML-SDC (based on libPFASST), PFASST were studied so far using ODEs, the Burgers, advection and shallow-water equations.

_codes/xbraid.md

@@ -1,30 +1,31 @@
 ---
 layout: page_code
+hide_hero: true
 title: "XBraid"
 date: 2014-11-05 17:00:00 +0000
 updated: 2015-06-03 19:40:00 +0200
 navbar: Codes
 subnavbar: xbraid
-logo: 
+logo:
 code_url: http://www.llnl.gov/casc/xbraid
 language: C
-github_repo: 
+github_repo:
 license: LGPL 2.1
 releases:
   - version: 1.0.*
     date: 2014-10-27
     link: https://computation.llnl.gov/project/parallel-time-integration/software.php
     download: https://computation.llnl.gov/project/parallel-time-integration/software.php
-developers: 
+developers:
   - link:
       name: See XBraid team page
       url: https://computation.llnl.gov/project/parallel-time-integration/team.php
 short_desc: A C library for the multigrid reduction in time (MGRIT) approach.
 ---
 
-A modern C library for the parallel-in-time method, multigrid reduction in time 
+A modern C library for the parallel-in-time method, multigrid reduction in time
 ([MGRIT](/methods/mgrit.html)) {% cite FriedhoffEtAl2013 %}.
-See [http://www.llnl.gov/casc/xbraid](http://www.llnl.gov/casc/xbraid) for more 
+See [http://www.llnl.gov/casc/xbraid](http://www.llnl.gov/casc/xbraid) for more
 information and a place to download the XBraid software.
 
 {% bibliography --cited %}

_config.yml

@@ -5,11 +5,11 @@ author: "Parallel-in-Time Enthusiasts"
 description: ""
 baseurl: ""
 url: "http://parallel-in-time.org"
+livereload: true
 
 markdown: kramdown
 
 exclude:
-  - vendor/
   - travis_deploy_rsa.enc
   - travis_deploy_rsa.pub
   - .travis.yml
@@ -25,6 +25,8 @@ plugins:
   - jekyll-sitemap
 
 theme: bulma-clean-theme
+footer_menu: footer-entries
+
 
 paginate: 5
 paginate_path: "/news/page:num/"
@@ -55,6 +57,7 @@ assets:
     automatic_img_size: false
     automatic_img_alt: false
 
+
 collections:
   events_upcoming:
     output: true

_data/footer-entries.yml

@@ -0,0 +1,8 @@
+- name: Imprint
+  link: /about/imprint.html
+- name: Privacy Policy
+  link: https://help.github.com/articles/github-privacy-statement/
+- name: Sources
+  link: https://github.com/Parallel-in-Time/parallel-in-time.github.io
+- name: Found a Typo?
+  link: https://github.com/Parallel-in-Time/parallel-in-time.github.io/issues

_data/navigation.yml

@@ -0,0 +1,30 @@
+- name: News
+  link: /news/
+- name: Workshops
+  dropdown:
+    - name: Overview
+      link: /events/index.html
+    - name: Upcoming
+      link: /events/upcoming/index.html
+    - name: Past
+      link: /events/past/index.html
+    - name: Bylaws
+      link: /events/bylaws.html
+    - name: Scientific Committee
+      link: /events/scientific_committee.html
+    - name: Travel Grants
+      link: /events/travel_grants.html
+- name: Research
+  dropdown:
+    - name: Methods
+      link: /methods/index.html
+    - name: Codes
+      link: /codes/index.html
+    - name: Groups
+      link: /groups/index.html
+    - name: Projects
+      link: /projects/index.html
+- name: References
+  link: /references/index.html
+- name: About
+  link: /about/index.html

_events_past/2011-06-03-1st-pint-workshop.md

@@ -1,5 +1,6 @@
 ---
 layout: page_event
+hide_hero: true
 title: "1st Workshop on Parallel-in-Time Integration"
 date: 2014-06-16 00:00:00 +0000
 event_url: https://www.ics.usi.ch/index.php/about/event/details/19-parallel-in-time-integration-schemes
@@ -31,4 +32,4 @@ Programme:
  - Martin J. Gander, University of Geneva: *Space-time Parallel Methods: From Waveform Relaxation tothe Parareal Algorithm*
  - Julien Cortial, Stanford University: *Time-Parallel Methods for Accelerating the Solution of Structural Dynamics Problems*
  - Michael L. Minion, University of North Carolina: *Efficient Parallel in Time Methods for Partial Differential Equations*
- - Stefan Guettel, University of Geneva: *Time-Parallel Integration of Linear Initial Value Problems*
+ - Stefan Guettel, University of Geneva: *Time-Parallel Integration of Linear Initial Value Problems*

_events_past/2013-06-17-2nd-pint-workshop.md

@@ -1,5 +1,6 @@
 ---
 layout: page_event
+hide_hero: true
 title: "2nd Workshop on Parallel-in-Time Integration"
 date: 2014-06-16 00:00:00 +0000
 event_location: Manchester, UK
@@ -47,4 +48,4 @@ Programme Wednesday June 19, 2013:
  - Julien Salomon, Universite Paris-Dauphine: *An intermediate state method for the time-parallelized solving of optimal control problems*
  - Joerg Wensch, TU Dresden: *Multirate time integration of the Euler equations*
  - Qiqi Wang, Massachusetts Institute of Technology: *Towards Scalable Parallel Long Time Integration of Chaotic Dynamical Systems*
- - Debasmita Samaddar, Culham Science Centre: *Temporal parallelization of advanced operation scenario simulations of fusion plasma*
+ - Debasmita Samaddar, Culham Science Centre: *Temporal parallelization of advanced operation scenario simulations of fusion plasma*

_events_past/2014-05-20-3rd-pint-workshop.md

@@ -1,5 +1,6 @@
 ---
 layout: page_event
+hide_hero: true
 title: "3rd Workshop on Parallel-in-Time Integration"
 date: 2014-06-16 00:00:00 +0000
 navbar: Events
@@ -36,4 +37,4 @@ subtitle: Brief overview
 page_type: event_page
 ---
 
-Partially supported by the DFG Priority Programme 1648 *Software for Exascale Computing* [SPPEXA](http://www.sppexa.de/sppexa-activities/eventsworkshops.html).
+Partially supported by the DFG Priority Programme 1648 *Software for Exascale Computing* [SPPEXA](http://www.sppexa.de/sppexa-activities/eventsworkshops.html).

_events_past/2015-05-27-4th-pint-workshop.md

@@ -1,5 +1,6 @@
 ---
 layout: page_event
+hide_hero: true
 title: "4th Workshop on Parallel-in-Time Integration"
 date: 2014-06-16 00:00:00 +0000
 updated: 2015-06-05 05:30:00 +0200