197 set up versioneer and test releasing (#225)

* set up versioning with versioneer 0.18

* revise setup cfg

* update contributing.md

* ci to display version numbers

* ignore autogenerated files

* Adds packaging tests

        - tests for python 3.x
        - adds license for setup.py
        - adds python3.x required in setup.cfg

Author: wyli

Diff for: .flake8

@@ -0,0 +1 @@
+monai/_version.py export-subst

Diff for: .gitattributes

@@ -10,7 +10,7 @@ jobs:
   flake8-py3:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v2
     - name: Set up Python 3.7
       uses: actions/setup-python@v1
       with:
@@ -24,7 +24,8 @@ jobs:
         pip install flake8 flake8-mypy flake8-bugbear flake8-comprehensions flake8-executable flake8-pyi mccabe pycodestyle pyflakes
         pip install pep8-naming
         flake8 --version
-        flake8 . --count --statistics --config .flake8
+        python -c 'import monai; monai.config.print_config()'
+        flake8 . --count --statistics
 
   test-py3:
     container:
@@ -51,3 +52,49 @@ jobs:
       uses: codecov/codecov-action@v1
       with:
         file: ./coverage.xml
+
+  packaging:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+      with:
+        fetch-depth: 0
+    - name: Set up Python 3.x
+      uses: actions/setup-python@v1
+      with:
+        python-version: '3.x'
+    - name: Install setuptools
+      run: |
+        python -m pip install --user --upgrade setuptools wheel
+    - name: Test source archive and wheel file
+      run: |
+        git fetch --depth=1 origin +refs/tags/*:refs/tags/*
+        root_dir=$PWD
+        echo "$root_dir"
+        set -e
+
+        # build tar.gz and wheel
+        python setup.py sdist bdist_wheel
+        tmp_dir=$(mktemp -d)
+        cp dist/monai* "$tmp_dir"
+        rm -r build dist monai.egg-info
+        cd "$tmp_dir"
+        ls -al
+
+        # install from wheel
+        python -m pip install monai*.whl
+        python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown"
+        python -c 'import monai; print(monai.__file__)'
+        python -m pip uninstall -y monai
+        rm monai*.whl
+
+        # install from tar.gz
+        python -m pip install monai*.tar.gz
+        python -c 'import monai; monai.config.print_config()' 2>&1 | grep -iv "unknown"
+        python -c 'import monai; print(monai.__file__)'
+        python -m pip uninstall -y monai
+        rm monai*.tar.gz
+
+        # clean up
+        cd "$root_dir"
+        rm -r "$tmp_dir"

Diff for: .github/workflows/pythonapp.yml

@@ -1,4 +1,4 @@
-name: Deploy
+name: deploy
 
 on:
   push:
@@ -44,7 +44,7 @@ jobs:
         pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI
     - name: Import
       run: |
-        python -c 'import monai; print(monai.__version__)'
+        python -c 'import monai; monai.config.print_config()'
     - name: Uninstall
       run: |
         pip uninstall -y monai
@@ -56,7 +56,7 @@ jobs:
     steps:
     - name: Import
       run: |
-        python -c 'import monai; print(monai.__version__)'
+        python -c 'import monai; monai.config.print_config()'
         cd /opt/monai
         ls -al
         ngc --version

Diff for: .github/workflows/setupapp.yml

@@ -42,7 +42,7 @@ Ideally, the new branch should be based on the latest `master` branch.
 1. Wait for the pull request to be merged.
 
 ### Coding style
-Coding style is checked by flake8, using [a flake8 configuration](https://github.com/Project-MONAI/MONAI/blob/master/.flake8) similar to [PyTorch's](https://github.com/pytorch/pytorch/blob/master/.flake8).
+Coding style is checked by flake8, using [a flake8 configuration](./setup.cfg) similar to [PyTorch's](https://github.com/pytorch/pytorch/blob/master/.flake8).
 
 License information: all source code files should start with this paragraph:
 ```
@@ -111,3 +111,17 @@ All code review comments should be specific, constructive, and actionable.
 
 [github ci]: https://github.com/Project-MONAI/MONAI/actions
 [monai issue list]: https://github.com/Project-MONAI/MONAI/issues
+
+
+## Admin tasks
+
+### Release a new version
+- Prepare [a release note](https://github.com/Project-MONAI/MONAI/releases)
+- Checkout a new branch `releasing-version-N`
+- Create a tag, for example `git tag -a 0.1a -m "version 0.1a"`
+- [Generate distribution archives](https://packaging.python.org/tutorials/packaging-projects/) `python3 setup.py sdist bdist_wheel`
+- Test the package locally `pip install monai`
+- Upload the package to [PyPI](https://pypi.org/project/monai/)
+- Publish the release note
+
+Note that the release should be tagged with a [PEP440](https://www.python.org/dev/peps/pep-0440/) compliant [semantic versioning](https://semver.org/spec/v2.0.0.html) number.

Diff for: CONTRIBUTING.md

@@ -0,0 +1,2 @@
+include versioneer.py
+include monai/_version.py

Diff for: MANIFEST.in

@@ -26,3 +26,7 @@ coverage:
 
 # Disable comments on PR
 comment: false
+
+ignore:
+  - "versioneer.py"
+  - "monai/_version.py"

Diff for: codecov.yml

@@ -12,10 +12,13 @@
 import os
 import sys
 
+from ._version import get_versions
 from .utils.module import load_submodules
 
+__version__ = get_versions()['version']
+del get_versions
+
 __copyright__ = "(c) 2020 MONAI Consortium"
-__version__ = "0.0.1"
 
 __basedir__ = os.path.dirname(__file__)