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Unable to generate SARAH cutouts #369

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1 of 2 tasks
rdcarr2 opened this issue Aug 9, 2024 · 1 comment
Open
1 of 2 tasks

Unable to generate SARAH cutouts #369

rdcarr2 opened this issue Aug 9, 2024 · 1 comment
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type: bug

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@rdcarr2
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rdcarr2 commented Aug 9, 2024 •
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Version Checks (indicate both or one)

  • I have confirmed this bug exists on the lastest release of Atlite.

  • I have confirmed this bug exists on the current master branch of Atlite.

Issue Description

Hey everyone, I'm trying to create SARAH cutouts for later use in producing PyPSA-Eur networks for different climate years, but keep getting the same error message after running cutout.prepare():

"ValueError: dimension lat on 0th function argument to apply_ufunc with dask='parallelized' consists of multiple chunks, but is also a core dimension. To fix, either rechunk into a single array chunk along this dimension, i.e., .chunk(dict(lat=-1)), or pass allow_rechunk=True in dask_gufunc_kwargs but beware that this may significantly increase memory usage."

I've tried the rechunking method suggested, but keep getting the same error regardless. I'm stuck now and not sure what to do, and ChatGPT is sending me in circles. Anyone experienced this issue and managed to find a solution?

Reproducible Example

import atlite
import logging

logging.basicConfig(level=logging.INFO)

cutout_2015_sarah = atlite.Cutout(
    path="europe-2015-sarah.nc",
    module=["sarah", "era5"],
    sarah_dir="/Users/robertcarr/Documents/HZB/Modelling/SARAH data/2014_2016",
    x=slice(-16.5, 40.5),
    y=slice(32.70, 75),
    time=slice("2015-01-01", "2015-02-01")
)


# Rechunk along the 'y' dimension
cutout_2015_sarah.data = cutout_2015_sarah.data.chunk(dict(y=-1))
cutout_2015_sarah.prepare()

Expected Behavior

Screenshot 2024-08-09 at 16 54 10

Installed Versions

name: pypsa-eur-RDC
channels:

  • bioconda
  • defaults
  • conda-forge
    dependencies:
  • affine=2.4.0=pyhd8ed1ab_0
  • ampl-mp=3.1.0=hbec66e7_1006
  • amply=0.1.6=pyhd8ed1ab_0
  • appdirs=1.4.4=pyh9f0ad1d_0
  • appnope=0.1.4=pyhd8ed1ab_0
  • argparse-dataclass=2.0.0=pyhd8ed1ab_0
  • asttokens=2.4.1=pyhd8ed1ab_0
  • atk-1.0=2.38.0=hd03087b_2
  • atlite=0.2.13=pyhd8ed1ab_0
  • attrs=23.2.0=pyh71513ae_0
  • aws-c-auth=0.7.22=h8a62e84_10
  • aws-c-cal=0.7.1=h94d0942_1
  • aws-c-common=0.9.23=h99b78c6_0
  • aws-c-compression=0.2.18=h94d0942_7
  • aws-c-event-stream=0.4.2=hb74cd8f_15
  • aws-c-http=0.8.2=had1507a_6
  • aws-c-io=0.14.10=hcdb10ff_1
  • aws-c-mqtt=0.10.4=h856d8ab_8
  • aws-c-s3=0.6.0=ha9fd6de_2
  • aws-c-sdkutils=0.1.16=h94d0942_3
  • aws-checksums=0.1.18=h94d0942_7
  • aws-crt-cpp=0.27.3=h9d3339c_2
  • aws-sdk-cpp=1.11.329=he6360a2_9
  • azure-core-cpp=1.12.0=hd01fc5c_0
  • azure-identity-cpp=1.8.0=h0a11218_1
  • azure-storage-blobs-cpp=12.11.0=h77cc766_1
  • azure-storage-common-cpp=12.6.0=h7024f69_1
  • azure-storage-files-datalake-cpp=12.10.0=h64d02d0_1
  • beautifulsoup4=4.12.3=pyha770c72_0
  • blosc=1.21.6=h5499902_0
  • bokeh=3.5.0=pyhd8ed1ab_0
  • bottleneck=1.4.0=py311h5d790af_1
  • branca=0.7.2=pyhd8ed1ab_0
  • brotli=1.1.0=hb547adb_1
  • brotli-bin=1.1.0=hb547adb_1
  • brotli-python=1.1.0=py311ha891d26_1
  • bzip2=1.0.8=h99b78c6_7
  • c-ares=1.32.3=h99b78c6_0
  • c-blosc2=2.15.0=h5063078_1
  • ca-certificates=2024.7.4=hf0a4a13_0
  • cads-api-client=1.1.0=pyhd8ed1ab_0
  • cairo=1.18.0=hc6c324b_2
  • cartopy=0.23.0=py311h4b4568b_1
  • cdsapi=0.7.0=pyhd8ed1ab_0
  • certifi=2024.7.4=pyhd8ed1ab_0
  • cffi=1.16.0=py311h4a08483_0
  • cfgv=3.3.1=pyhd8ed1ab_0
  • cfitsio=4.4.1=h793ed5c_0
  • cftime=1.6.4=py311h5d790af_0
  • charset-normalizer=3.3.2=pyhd8ed1ab_0
  • click=8.1.7=unix_pyh707e725_0
  • click-plugins=1.1.1=py_0
  • cligj=0.7.2=pyhd8ed1ab_1
  • cloudpickle=3.0.0=pyhd8ed1ab_0
  • coin-or-cbc=2.10.11=h700c273_0
  • coin-or-cgl=0.60.7=hf050ae7_0
  • coin-or-clp=1.17.8=h65c2c7c_0
  • coin-or-osi=0.108.10=h0dc0bf9_0
  • coin-or-utils=2.11.11=hafd1a81_1
  • coincbc=2.10.11=0_metapackage
  • colorama=0.4.6=pyhd8ed1ab_0
  • comm=0.2.2=pyhd8ed1ab_0
  • conda-inject=1.3.2=pyhd8ed1ab_0
  • configargparse=1.7=pyhd8ed1ab_0
  • connection_pool=0.0.3=pyhd3deb0d_0
  • contourpy=1.2.1=py311hcc98501_0
  • country_converter=1.2=pyhd8ed1ab_0
  • cppad=20240000.5=h00cdb27_0
  • cycler=0.12.1=pyhd8ed1ab_0
  • cytoolz=0.12.3=py311h05b510d_0
  • dask=2024.7.1=pyhd8ed1ab_0
  • dask-core=2024.7.1=pyhd8ed1ab_0
  • dask-expr=1.1.9=pyhd8ed1ab_0
  • datrie=0.8.2=py311heffc1b2_7
  • debugpy=1.8.2=py311hb9542d7_0
  • decorator=5.1.1=pyhd8ed1ab_0
  • deprecation=2.1.0=pyh9f0ad1d_0
  • descartes=1.1.0=py_4
  • distlib=0.3.8=pyhd8ed1ab_0
  • distributed=2024.7.1=pyhd8ed1ab_0
  • docutils=0.21.2=pyhd8ed1ab_0
  • dpath=2.2.0=pyha770c72_0
  • entsoe-py=0.6.8=pyhd8ed1ab_0
  • et_xmlfile=1.1.0=pyhd8ed1ab_0
  • exceptiongroup=1.2.2=pyhd8ed1ab_0
  • executing=2.0.1=pyhd8ed1ab_0
  • expat=2.6.2=hebf3989_0
  • filelock=3.15.4=pyhd8ed1ab_0
  • fiona=1.9.6=py311hf75b9fa_3
  • fmt=10.2.1=h2ffa867_0
  • folium=0.17.0=pyhd8ed1ab_0
  • font-ttf-dejavu-sans-mono=2.37=hab24e00_0
  • font-ttf-inconsolata=3.000=h77eed37_0
  • font-ttf-source-code-pro=2.038=h77eed37_0
  • font-ttf-ubuntu=0.83=h77eed37_2
  • fontconfig=2.14.2=h82840c6_0
  • fonts-conda-ecosystem=1=0
  • fonts-conda-forge=1=0
  • fonttools=4.53.1=py311hd3f4193_0
  • freetype=2.12.1=hadb7bae_2
  • freexl=2.0.0=hfbad9fb_0
  • fribidi=1.0.10=h27ca646_0
  • fsspec=2024.6.1=pyhff2d567_0
  • gdal=3.9.1=py311h08b0975_8
  • gdk-pixbuf=2.42.12=h7ddc832_0
  • geographiclib=2.0=pyhd8ed1ab_0
  • geojson-rewind=1.1.0=pyhd8ed1ab_0
  • geopandas=1.0.1=pyhd8ed1ab_0
  • geopandas-base=1.0.1=pyha770c72_0
  • geopy=2.4.1=pyhd8ed1ab_1
  • geos=3.12.2=h00cdb27_1
  • geotiff=1.7.3=h7e5fb84_1
  • gflags=2.2.2=hc88da5d_1004
  • giflib=5.2.2=h93a5062_0
  • gitdb=4.0.11=pyhd8ed1ab_0
  • gitpython=3.1.43=pyhd8ed1ab_0
  • glog=0.7.1=heb240a5_0
  • glpk=5.0=h6d7a090_0
  • gmp=6.3.0=h7bae524_2
  • graphite2=1.3.13=hebf3989_1003
  • graphviz=11.0.0=h9bb9bc9_0
  • gtk2=2.24.33=h91d5085_5
  • gts=0.7.6=he42f4ea_4
  • h2=4.1.0=pyhd8ed1ab_0
  • harfbuzz=9.0.0=h1836168_0
  • hdf4=4.2.15=h2ee6834_7
  • hdf5=1.14.3=nompi_hec07895_105
  • hpack=4.0.0=pyh9f0ad1d_0
  • humanfriendly=10.0=pyhd8ed1ab_6
  • hyperframe=6.0.1=pyhd8ed1ab_0
  • icu=73.2=hc8870d7_0
  • identify=2.6.0=pyhd8ed1ab_0
  • idna=3.7=pyhd8ed1ab_0
  • immutables=0.20=py311heffc1b2_1
  • importlib-metadata=8.1.0=pyha770c72_0
  • importlib_metadata=8.1.0=hd8ed1ab_0
  • importlib_resources=6.4.0=pyhd8ed1ab_0
  • iniconfig=2.0.0=pyhd8ed1ab_0
  • ipopt=3.14.16=h387674d_4
  • ipykernel=6.29.5=pyh57ce528_0
  • ipython=8.26.0=pyh707e725_0
  • jedi=0.19.1=pyhd8ed1ab_0
  • jinja2=3.1.4=pyhd8ed1ab_0
  • joblib=1.4.2=pyhd8ed1ab_0
  • json-c=0.17=he54c16a_1
  • jsonschema=4.23.0=pyhd8ed1ab_0
  • jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
  • jupyter_client=8.6.2=pyhd8ed1ab_0
  • jupyter_core=5.7.2=py311h267d04e_0
  • kealib=1.5.3=h848a2d4_1
  • kiwisolver=1.4.5=py311he4fd1f5_1
  • krb5=1.21.3=h237132a_0
  • lcms2=2.16=ha0e7c42_0
  • lerc=4.0.0=h9a09cb3_0
  • libabseil=20240116.2=cxx17_h00cdb27_1
  • libaec=1.1.3=hebf3989_0
  • libarchive=3.7.4=h83d404f_0
  • libarrow=17.0.0=h2a00445_0_cpu
  • libarrow-acero=17.0.0=h00cdb27_0_cpu
  • libarrow-dataset=17.0.0=h00cdb27_0_cpu
  • libarrow-substrait=17.0.0=hc68f6b8_0_cpu
  • libblas=3.9.0=23_osxarm64_openblas
  • libbrotlicommon=1.1.0=hb547adb_1
  • libbrotlidec=1.1.0=hb547adb_1
  • libbrotlienc=1.1.0=hb547adb_1
  • libcblas=3.9.0=23_osxarm64_openblas
  • libcrc32c=1.1.2=hbdafb3b_0
  • libcurl=8.9.0=hfd8ffcc_0
  • libcxx=18.1.8=h167917d_0
  • libdeflate=1.20=h93a5062_0
  • libedit=3.1.20191231=hc8eb9b7_2
  • libev=4.33=h93a5062_2
  • libevent=2.1.12=h2757513_1
  • libexpat=2.6.2=hebf3989_0
  • libffi=3.4.2=h3422bc3_5
  • libgd=2.3.3=hfdf3952_9
  • libgdal=3.9.1=hce30654_8
  • libgdal-core=3.9.1=hf00468f_8
  • libgdal-fits=3.9.1=h7a7a030_8
  • libgdal-grib=3.9.1=hdd4b840_8
  • libgdal-hdf4=3.9.1=h94124bd_8
  • libgdal-hdf5=3.9.1=hf90b89a_8
  • libgdal-jp2openjpeg=3.9.1=h54bcb16_8
  • libgdal-kea=3.9.1=hacb1b3e_8
  • libgdal-netcdf=3.9.1=h1723b65_8
  • libgdal-pdf=3.9.1=h4cf08c4_8
  • libgdal-pg=3.9.1=h7d28298_8
  • libgdal-postgisraster=3.9.1=h7d28298_8
  • libgdal-tiledb=3.9.1=hbb20944_8
  • libgdal-xls=3.9.1=hb39617b_8
  • libgfortran=5.0.0=13_2_0_hd922786_3
  • libgfortran5=13.2.0=hf226fd6_3
  • libglib=2.80.3=h59d46d9_1
  • libgoogle-cloud=2.26.0=hfe08963_0
  • libgoogle-cloud-storage=2.26.0=h1466eeb_0
  • libgrpc=1.62.2=h9c18a4f_0
  • libhwloc=2.11.1=default_h7685b71_1000
  • libiconv=1.17=h0d3ecfb_2
  • libintl=0.22.5=h8fbad5d_2
  • libjpeg-turbo=3.0.0=hb547adb_1
  • libkml=1.3.0=h00ed6cc_1020
  • liblapack=3.9.0=23_osxarm64_openblas
  • liblapacke=3.9.0=23_osxarm64_openblas
  • libnetcdf=4.9.2=nompi_he469be0_114
  • libnghttp2=1.58.0=ha4dd798_1
  • libopenblas=0.3.27=openmp_h517c56d_1
  • libparquet=17.0.0=hcf52c46_0_cpu
  • libpng=1.6.43=h091b4b1_0
  • libpq=16.3=h7afe498_0
  • libprotobuf=4.25.3=hbfab5d5_0
  • libre2-11=2023.09.01=h7b2c953_2
  • librsvg=2.58.2=h1db61d3_1
  • librttopo=1.1.0=h31fb324_16
  • libscotch=7.0.4=h7c38b86_5
  • libsodium=1.0.18=h27ca646_1
  • libspatialite=5.1.0=hf7a34df_8
  • libsqlite=3.46.0=hfb93653_0
  • libssh2=1.11.0=h7a5bd25_0
  • libthrift=0.19.0=h026a170_1
  • libtiff=4.6.0=h07db509_3
  • libutf8proc=2.8.0=h1a8c8d9_0
  • libwebp=1.4.0=h54798ee_0
  • libwebp-base=1.4.0=h93a5062_0
  • libxcb=1.16=hf2054a2_0
  • libxml2=2.12.7=h9a80f22_3
  • libxslt=1.1.39=h223e5b9_0
  • libzip=1.10.1=ha0bc3c6_3
  • libzlib=1.3.1=hfb2fe0b_1
  • linopy=0.3.13=pyhd8ed1ab_0
  • llvm-openmp=18.1.8=hde57baf_0
  • locket=1.0.0=pyhd8ed1ab_0
  • lxml=5.2.2=py311hf9a6a72_0
  • lz4=4.3.3=py311hd44b8e9_0
  • lz4-c=1.9.4=hb7217d7_0
  • lzo=2.10=h93a5062_1001
  • mapclassify=2.6.1=pyhd8ed1ab_0
  • markupsafe=2.1.5=py311h05b510d_0
  • matplotlib=3.9.1=py311ha1ab1f8_0
  • matplotlib-base=3.9.1=py311hba6b155_0
  • matplotlib-inline=0.1.7=pyhd8ed1ab_0
  • memory_profiler=0.61.0=pyhd8ed1ab_0
  • metis=5.1.0=h13dd4ca_1007
  • minizip=4.0.7=h27ee973_0
  • mpfr=4.2.1=h41d338b_1
  • msgpack-python=1.0.8=py311h6bde47b_0
  • multiurl=0.3.1=pyhd8ed1ab_0
  • mumps-include=5.7.2=hce30654_0
  • mumps-seq=5.7.2=hab9b160_0
  • munkres=1.1.4=pyh9f0ad1d_0
  • nbformat=5.10.4=pyhd8ed1ab_0
  • ncurses=6.5=hb89a1cb_0
  • nest-asyncio=1.6.0=pyhd8ed1ab_0
  • netcdf4=1.7.1=nompi_py311h42682c7_101
  • networkx=3.3=pyhd8ed1ab_1
  • nodeenv=1.9.1=pyhd8ed1ab_0
  • nspr=4.35=hb7217d7_0
  • nss=3.102=hc42bcbf_0
  • numexpr=2.10.0=py311h4b4568b_0
  • numpy=1.26.4=py311h7125741_0
  • openjdk=22.0.1=h363fedd_1
  • openjpeg=2.5.2=h9f1df11_0
  • openpyxl=3.1.4=py311h1fc4b72_0
  • openssl=3.3.1=hfb2fe0b_2
  • orc=2.0.1=h47ade37_1
  • packaging=24.1=pyhd8ed1ab_0
  • pandas=2.2.2=py311h4b4568b_1
  • pango=1.54.0=h9ee27a3_1
  • parso=0.8.4=pyhd8ed1ab_0
  • partd=1.4.2=pyhd8ed1ab_0
  • patsy=0.5.6=pyhd8ed1ab_0
  • pcre2=10.44=h297a79d_0
  • pexpect=4.9.0=pyhd8ed1ab_0
  • pickleshare=0.7.5=py_1003
  • pillow=10.4.0=py311hd7951ec_0
  • pip=24.0=pyhd8ed1ab_0
  • pixman=0.43.4=hebf3989_0
  • pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
  • plac=1.4.3=pyhd8ed1ab_0
  • platformdirs=4.2.2=pyhd8ed1ab_0
  • pluggy=1.5.0=pyhd8ed1ab_0
  • ply=3.11=pyhd8ed1ab_2
  • polars=1.2.1=py311h9e175c1_0
  • poppler=24.07.0=h9787579_0
  • poppler-data=0.4.12=hd8ed1ab_0
  • postgresql=16.3=hdfa2ec6_0
  • powerplantmatching=0.5.15=pyhd8ed1ab_0
  • pre-commit=3.7.1=pyha770c72_0
  • progressbar2=4.4.2=pyhd8ed1ab_0
  • proj=9.4.1=hfb94cee_0
  • prompt-toolkit=3.0.47=pyha770c72_0
  • psutil=6.0.0=py311hd3f4193_0
  • pthread-stubs=0.4=h27ca646_1001
  • ptyprocess=0.7.0=pyhd3deb0d_0
  • pulp=2.8.0=py311h267d04e_0
  • pure_eval=0.2.3=pyhd8ed1ab_0
  • py-cpuinfo=9.0.0=pyhd8ed1ab_0
  • pyarrow=17.0.0=py311h35c05fe_0
  • pyarrow-core=17.0.0=py311hf5072a7_0_cpu
  • pyarrow-hotfix=0.6=pyhd8ed1ab_0
  • pycountry=24.6.1=pyhd8ed1ab_0
  • pycparser=2.22=pyhd8ed1ab_0
  • pygments=2.18.0=pyhd8ed1ab_0
  • pyogrio=0.8.0=py311he661659_2
  • pyomo=6.6.1=py311ha891d26_0
  • pyparsing=3.1.2=pyhd8ed1ab_0
  • pyproj=3.6.1=py311h5e0e26b_7
  • pypsa=0.28.0=pyhd8ed1ab_0
  • pyscipopt=5.1.1=py311hb9542d7_0
  • pyshp=2.3.1=pyhd8ed1ab_0
  • pysocks=1.7.1=pyha2e5f31_6
  • pytables=3.9.2=py311h5d6d252_3
  • pytest=8.3.1=pyhd8ed1ab_0
  • python=3.11.9=h932a869_0_cpython
  • python-dateutil=2.9.0=pyhd8ed1ab_0
  • python-fastjsonschema=2.20.0=pyhd8ed1ab_0
  • python-tzdata=2024.1=pyhd8ed1ab_0
  • python-utils=3.8.2=pyhd8ed1ab_0
  • python_abi=3.11=4_cp311
  • pytz=2024.1=pyhd8ed1ab_0
  • pyxlsb=1.0.10=pyhd8ed1ab_0
  • pyyaml=6.0.1=py311heffc1b2_1
  • pyzmq=26.0.3=py311h9bed540_0
  • qhull=2020.2=h420ef59_5
  • rasterio=1.3.10=py311he66545a_4
  • re2=2023.09.01=h4cba328_2
  • readline=8.2=h92ec313_1
  • referencing=0.35.1=pyhd8ed1ab_0
  • requests=2.32.3=pyhd8ed1ab_0
  • reretry=0.11.8=pyhd8ed1ab_0
  • rioxarray=0.17.0=pyhd8ed1ab_0
  • rpds-py=0.19.0=py311h98c6a39_0
  • scikit-learn=1.5.1=py311hbfb48bc_0
  • scip=9.1.0=h55df89c_0
  • scipy=1.14.0=py311hceeca8c_1
  • seaborn=0.13.2=hd8ed1ab_2
  • seaborn-base=0.13.2=pyhd8ed1ab_2
  • setuptools=71.0.4=pyhd8ed1ab_0
  • setuptools-scm=8.1.0=pyhd8ed1ab_0
  • setuptools_scm=8.1.0=hd8ed1ab_0
  • shapely=2.0.5=py311h0f19114_0
  • six=1.16.0=pyh6c4a22f_0
  • smart_open=7.0.4=pyhd8ed1ab_0
  • smmap=5.0.0=pyhd8ed1ab_0
  • snakemake-interface-common=1.17.2=pyhdfd78af_0
  • snakemake-interface-executor-plugins=9.2.0=pyhdfd78af_0
  • snakemake-interface-report-plugins=1.0.0=pyhdfd78af_0
  • snakemake-interface-storage-plugins=3.2.3=pyhdfd78af_0
  • snakemake-minimal=8.16.0=pyhdfd78af_0
  • snappy=1.2.1=hd02b534_0
  • snuggs=1.4.7=py_0
  • sortedcontainers=2.4.0=pyhd8ed1ab_0
  • soupsieve=2.5=pyhd8ed1ab_1
  • spdlog=1.13.0=h5fcca99_0
  • sqlite=3.46.0=h5838104_0
  • stack_data=0.6.2=pyhd8ed1ab_0
  • statsmodels=0.14.2=py311h5d790af_0
  • stopit=1.1.2=py_0
  • tabula-py=2.7.0=py311h267d04e_1
  • tabulate=0.9.0=pyhd8ed1ab_1
  • tbb=2021.12.0=h420ef59_3
  • tblib=3.0.0=pyhd8ed1ab_0
  • threadpoolctl=3.5.0=pyhc1e730c_0
  • throttler=1.2.2=pyhd8ed1ab_0
  • tiledb=2.24.2=h5def871_2
  • tk=8.6.13=h5083fa2_1
  • tomli=2.0.1=pyhd8ed1ab_0
  • toolz=0.12.1=pyhd8ed1ab_0
  • toposort=1.10=pyhd8ed1ab_0
  • tornado=6.4.1=py311hd3f4193_0
  • tqdm=4.66.4=pyhd8ed1ab_0
  • traitlets=5.14.3=pyhd8ed1ab_0
  • typing-extensions=4.12.2=hd8ed1ab_0
  • typing_extensions=4.12.2=pyha770c72_0
  • tzcode=2024a=h93a5062_0
  • tzdata=2024a=h0c530f3_0
  • ukkonen=1.0.1=py311he4fd1f5_4
  • unidecode=1.3.8=pyhd8ed1ab_0
  • unixodbc=2.3.12=h0e2417a_0
  • uriparser=0.9.8=h00cdb27_0
  • urllib3=2.2.2=pyhd8ed1ab_1
  • validators=0.33.0=pyhd8ed1ab_0
  • virtualenv=20.26.3=pyhd8ed1ab_0
  • wcwidth=0.2.13=pyhd8ed1ab_0
  • wheel=0.43.0=pyhd8ed1ab_1
  • wrapt=1.16.0=py311h05b510d_0
  • xarray=2024.6.0=pyhd8ed1ab_1
  • xerces-c=3.2.5=hf393695_0
  • xlrd=2.0.1=pyhd8ed1ab_3
  • xorg-libxau=1.0.11=hb547adb_0
  • xorg-libxdmcp=1.1.3=h27ca646_0
  • xyzservices=2024.6.0=pyhd8ed1ab_0
  • xz=5.2.6=h57fd34a_0
  • yaml=0.2.5=h3422bc3_2
  • yte=1.5.4=pyha770c72_0
  • zeromq=4.3.5=hcc0f68c_4
  • zict=3.0.0=pyhd8ed1ab_0
  • zipp=3.19.2=pyhd8ed1ab_0
  • zlib=1.3.1=hfb2fe0b_1
  • zlib-ng=2.2.1=h00cdb27_0
  • zstandard=0.23.0=py311h4a6b76e_0
  • zstd=1.5.6=hb46c0d2_0
  • pip:
    • gurobipy==11.0.3
    • highspy==1.7.2
    • oauthlib==3.2.2
    • requests-oauthlib==1.3.1
    • snakemake-executor-plugin-cluster-generic==1.0.9
    • snakemake-executor-plugin-slurm==0.8.0
    • snakemake-executor-plugin-slurm-jobstep==0.2.1
    • snakemake-storage-plugin-http==0.2.3
    • tsam==2.3.1
      prefix: /Users/robertcarr/miniforge3/envs/pypsa-eur-RDC
@euronion
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Hey there!

I haven't seen the issue before. I think the underlying rechunk would need to happen on the SARAH data, not on the cutout. A wild guess would be that you could you try to pass the chunk argument to the prepare(...) function similarly as shown in the example here:

https://atlite.readthedocs.io/en/latest/examples/create_cutout_SARAH.html#Specifying-the-cutout

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