pyproject.toml

[project]
name = "snakedispatch"
dynamic = ["version"]
description = "FastAPI microservice for dispatching Snakemake workflows to compute backends"
requires-python = ">=3.12"
dependencies = [
    "fastapi>=0.115,<1",
    "uvicorn[standard]>=0.34,<1",
    "sse-starlette>=2.2,<3",
    "pydantic>=2.10,<3",
    "pydantic-settings>=2.7,<3",
    "pyyaml>=6,<7",
]

[project.optional-dependencies]
slurm = [
    "asyncssh>=2.18,<3",
]
dev = [
    "pytest>=8,<9",
    "pytest-asyncio>=0.25,<1",
    "httpx>=0.28,<1",
    "ruff>=0.9,<1",
]

[build-system]
requires = ["setuptools>=64", "setuptools_scm>=8"]
build-backend = "setuptools.build_meta"

[tool.setuptools.packages.find]
include = ["app*"]

[tool.setuptools_scm]
version_scheme = "no-guess-dev"

[tool.pytest.ini_options]
asyncio_mode = "auto"

[tool.ruff]
line-length = 88
target-version = "py312"

[tool.ruff.lint]
select = [
    'F',        # pyflakes
    'E',        # pycodestyle: Error
    'W',        # pycodestyle: Warning
    'I',        # isort
    'UP',       # pyupgrade
    'PL',       # pylint
    'PERF',     # perflint
    'ANN',      # flake8-annotations
    'ASYNC',    # flake8-async
    'TID',      # flake8-tidy-imports
    'S',        # flake8-bandit
    'B',        # flake8-bugbear
    'C4',       # flake8-comprehensions
    'EM',       # flake8-errmsg
    'G',        # flake8-logging-format
    'PIE',      # flake8-pie
    'T20',      # flake8-print
    'PYI',      # flake8-pyi
    'PT',       # flake8-pytest-style
    'SIM',      # flake8-simplify
    'TC',       # flake8-type-checking — NOTE: TC001 ignored below (FastAPI needs runtime imports)
    'PTH',      # flake8-use-pathlib
    'RUF013',   # ruff
    'ERA',      # eradicate
    'TRY',      # tryceratops
]

ignore = [
    'ANN401',   # Dynamically typed expressions are forbidden
    'ASYNC240', # Pathlib in async — trivial metadata calls, or already wrapped in to_thread
    'B008',     # function call in default argument value
    'PLR2004',  # Magic value used in comparison — too noisy for protocol parsing
    'TC001',    # Move import into TYPE_CHECKING — breaks FastAPI runtime annotation resolution
    'TC002',    # Same as TC001 for third-party imports
    'TC003',    # Same as TC001 for stdlib imports
]

[tool.ruff.lint.per-file-ignores]
"{test,tests,examples,doc,docs}/**" = [
    'ERA',      # eradicate
    'S',        # flake8-bandit
    'B',        # flake8-bugbear
    'EM',       # flake8-errmsg
    'T20',      # flake8-print
    'SIM',      # flake8-simplify
    'ARG',      # flake8-unused-arguments
    'PL',       # pylint
    'TRY',      # tryceratops
    'ANN',      # flake8-annotations
]

[tool.ruff.lint.pylint]
max-args = 7

[tool.ruff.lint.flake8-tidy-imports]
ban-relative-imports = "all"