Merge pull request #122 from RConsortium/bs-remove-pkgs-for-renv #23
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| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'ectd_readme/README.qmd' | |
| - 'adrg/_adrg.qmd' | |
| - 'cover-letter/cover-letter.qmd' | |
| - 'pilot5-submission/**' | |
| - 'renv.lock' | |
| name: Publish ECTD bundle | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pages: write | |
| id-token: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Install Nix | |
| uses: DeterminateSystems/nix-installer-action@main | |
| with: | |
| logger: pretty | |
| log-directives: nix-installer=trace | |
| backtrace: full | |
| - name: Nix cache | |
| uses: DeterminateSystems/magic-nix-cache-action@main | |
| - name: Build development environment | |
| run: | | |
| nix-build | |
| - name: Render ADRG PDF (custom) | |
| env: | |
| QUARTO_PRINT_STACK: true | |
| run: | | |
| nix-shell --run 'quarto render adrg/adrg-quarto-pdf.qmd --to pdf' | |
| shell: bash | |
| - name: Publish ADRG HTML to QuartoPub | |
| env: | |
| QUARTO_PUB_AUTH_TOKEN: ${{ secrets.QUARTO_PUB_AUTH_TOKEN }} | |
| run: | | |
| nix-shell --run "quarto publish --no-prompt --no-browser --id 91e55c70-e667-47c8-ae39-bd0284b68ca8 adrg/adrg-quarto-html.qmd" | |
| - name: Render ECTD README (custom) | |
| env: | |
| QUARTO_PRINT_STACK: true | |
| run: | | |
| nix-shell --run 'quarto render ectd_readme/README.qmd --to gfm' | |
| - name: Render cover letter (custom) | |
| env: | |
| QUARTO PRINT STACK: true | |
| run: | | |
| nix-shell --run 'quarto render cover-letter/cover-letter.qmd' | |
| - name: Set up object storage s3cmd cli tool | |
| uses: s3-actions/s3cmd@v1.6.1 | |
| with: | |
| provider: linode | |
| region: 'us-east-1' | |
| access_key: ${{ secrets.S3_ACCESS_KEY }} | |
| secret_key: ${{ secrets.S3_SECRET_KEY }} | |
| - name: Publish ADRG PDF to object storage | |
| run: | | |
| s3cmd put adrg/adrg-quarto-pdf.pdf --mime-type 'application/pdf' --acl-public s3://rsubmission-draft/pilot4-container-adrg.pdf | |
| - name: Check out ECTD bundle destination repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: RConsortium/submissions-pilot5-datasetjson-to-fda | |
| path: ./submissions-pilot5-datasetjson-to-fda | |
| token: ${{ secrets.API_TOKEN_GITHUB }} | |
| - name: Create ECTD bundle | |
| run: bash ./.github/scripts/create-ectd-bundle.sh | |
| - name: Archive ECTD bundle | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ectd-bundle-archive | |
| path: submissions-pilot5-datasetjson-to-fda | |
| - name: Push ECTD bundle repository | |
| run: bash ./.github/scripts/push-ectd-bundle.sh | |