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Galaxy wrapper for Gibbs sampler to estimate posterior probabilities #466

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Tracked by #454
hechth opened this issue Dec 4, 2023 · 1 comment · May be fixed by #468
Open
Tracked by #454

Galaxy wrapper for Gibbs sampler to estimate posterior probabilities #466

hechth opened this issue Dec 4, 2023 · 1 comment · May be fixed by #468
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@hechth
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hechth commented Dec 4, 2023

The Gibbs sampler has multiple wrappers for the different inputs so we need to investigate that a little bit.

Also the output dictionary should be flattened to contain all rows in a single dataframe and the feature id should be added as an additional column.

For the Gibbs samplers we need to reconstruct dictionary based input format (output of annotations) from the dataframe.

@hechth hechth mentioned this issue Dec 4, 2023
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@hechth
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hechth commented Dec 13, 2023

The Gibbs sampler wrapper should work in 3 different modes - only adducts, only bio, or both. Depending on the mode, a different will be called and different parameters will be required. For an examplke see the RAMCLustR wrapper.

@hechth hechth linked a pull request Aug 15, 2024 that will close this issue
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