@@ -236,17 +236,17 @@ def test_FET_example_3():
236236 "add_qnode(ids=MONDO:0005148, key=n00, categories=biolink:Disease)" ,
237237 "add_qnode(categories=biolink:PhenotypicFeature, key=n01)" ,
238238 "add_qedge(subject=n00, object=n01, key=e00)" ,
239- "expand(edge_key=e00, kp=infores:retriever, prune_threshold=20 )" ,
239+ "expand(edge_key=e00, kp=infores:retriever, prune_threshold=5 )" ,
240240 "overlay(action=fisher_exact_test, subject_qnode_key=n00, object_qnode_key=n01, virtual_relation_label=FET1, rel_edge_key=e00)" ,
241241 "filter_kg(action=remove_edges_by_continuous_attribute, edge_attribute=fisher_exact_test_p-value, direction=above, threshold=0.001, remove_connected_nodes=t, qnode_keys=[n01])" ,
242242 "add_qnode(categories=biolink:Disease, key=n02)" ,
243243 "add_qedge(subject=n01,object=n02,key=e01)" ,
244- "expand(edge_key=e01, kp=infores:retriever, prune_threshold=20 )" ,
244+ "expand(edge_key=e01, kp=infores:retriever, prune_threshold=5 )" ,
245245 "overlay(action=fisher_exact_test, subject_qnode_key=n01, object_qnode_key=n02, virtual_relation_label=FET2, rel_edge_key=e01)" ,
246246 "filter_kg(action=remove_edges_by_continuous_attribute, edge_attribute=fisher_exact_test_p-value, direction=above, threshold=0.001, remove_connected_nodes=t, qnode_keys=[n02])" ,
247247 "add_qnode(categories=biolink:Gene, key=n03)" ,
248248 "add_qedge(subject=n02, object=n03, key=e02)" ,
249- "expand(edge_key=e02, kp=infores:retriever, prune_threshold=20 )" ,
249+ "expand(edge_key=e02, kp=infores:retriever, prune_threshold=5 )" ,
250250 "resultify()" ,
251251 "return(message=true, store=false)"
252252 ]}}
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