Skip to content

Commit fa8cee1

Browse files
committed
#2712 speeding up test_ARAX_workflows.py::test_FET_example_3
1 parent 7282f04 commit fa8cee1

1 file changed

Lines changed: 3 additions & 3 deletions

File tree

code/ARAX/test/test_ARAX_workflows.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -236,17 +236,17 @@ def test_FET_example_3():
236236
"add_qnode(ids=MONDO:0005148, key=n00, categories=biolink:Disease)",
237237
"add_qnode(categories=biolink:PhenotypicFeature, key=n01)",
238238
"add_qedge(subject=n00, object=n01, key=e00)",
239-
"expand(edge_key=e00, kp=infores:retriever, prune_threshold=20)",
239+
"expand(edge_key=e00, kp=infores:retriever, prune_threshold=5)",
240240
"overlay(action=fisher_exact_test, subject_qnode_key=n00, object_qnode_key=n01, virtual_relation_label=FET1, rel_edge_key=e00)",
241241
"filter_kg(action=remove_edges_by_continuous_attribute, edge_attribute=fisher_exact_test_p-value, direction=above, threshold=0.001, remove_connected_nodes=t, qnode_keys=[n01])",
242242
"add_qnode(categories=biolink:Disease, key=n02)",
243243
"add_qedge(subject=n01,object=n02,key=e01)",
244-
"expand(edge_key=e01, kp=infores:retriever, prune_threshold=20)",
244+
"expand(edge_key=e01, kp=infores:retriever, prune_threshold=5)",
245245
"overlay(action=fisher_exact_test, subject_qnode_key=n01, object_qnode_key=n02, virtual_relation_label=FET2, rel_edge_key=e01)",
246246
"filter_kg(action=remove_edges_by_continuous_attribute, edge_attribute=fisher_exact_test_p-value, direction=above, threshold=0.001, remove_connected_nodes=t, qnode_keys=[n02])",
247247
"add_qnode(categories=biolink:Gene, key=n03)",
248248
"add_qedge(subject=n02, object=n03, key=e02)",
249-
"expand(edge_key=e02, kp=infores:retriever, prune_threshold=20)",
249+
"expand(edge_key=e02, kp=infores:retriever, prune_threshold=5)",
250250
"resultify()",
251251
"return(message=true, store=false)"
252252
]}}

0 commit comments

Comments
 (0)