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src/README.md

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# Python Source Code
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## Information about each script
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- `Generate_Seq.py`: generates simulated DNA sequences with domains of homogeneous GC Content. Simulated Sequences can either have equal-length domains or variable-length domains.
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- `Testing_Library.py`:
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- `ViewGC.py`: Shows a graph of window-based GC content using the FASTA sequence and JSON sequence data files inputted.
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- `score_eqlengths.py`: Compiles data for correlational analysis between ground truth domain length for EQUAL-LENGTH SEQUENCES and average predicted length by both isoPlotter and isoSegmenter.
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- `score_varlengths.py`:Compiles data for correlational analysis between ground truth number of domains for VARIABLE-LENGTH SEQUENCES and average predictions by both isoPlotter and isoSegmenter.
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- `score_isoplotter.py`: Scores all predictions made by isoPlotter (equal length and variable length) and outputs summary data
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- `score_isosegmenter.py`: Scores all predictions made by isoSegmenter (equal length and variable length) and outputs summary data
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## Python Package Requirements
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- biopython (version 1.78)
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- numpy (version 1.20.2)
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- matplotlib (version 3.4.1)

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