diff --git a/configs/dmmm.yaml b/configs/dmmm.yaml index 9d0fec3..4ff108e 100644 --- a/configs/dmmm.yaml +++ b/configs/dmmm.yaml @@ -43,10 +43,11 @@ algorithms: g: [0] datasets: + # TODO: use old paramaters for datasets + # HIV: https://github.com/Reed-CompBio/spras-benchmarking/blob/0293ae4dc0be59502fac06b42cfd9796a4b4413e/hiv-benchmarking/spras-config/config.yaml - label: dmmmhiv060 node_files: ["processed_prize_060.txt"] edge_files: ["phosphosite-irefindex13.0-uniprot.txt"] - # Placeholder other_files: [] data_dir: "datasets/hiv/processed" - label: dmmmhiv05 @@ -54,3 +55,9 @@ datasets: edge_files: ["phosphosite-irefindex13.0-uniprot.txt"] other_files: [] data_dir: "datasets/hiv/processed" + # Yeast: https://github.com/tristan-f-r/spras-benchmarking/blob/9477d85871024a5e3a4b0b8b9be7e78c0d0ee961/yeast-osmotic-stress/config.yaml + - label: dmmmyeast + node_files: ["prizes1_dummies.txt"] + edge_files: ["network1.txt"] + other_files: [] + data_dir: "datasets/yeast-osmotic-stress/processed"