Capturing errors thrown by algorithms run inside Docker containers

[agitter]

Currently our wrapper functions that run commands in containers catch exceptions aggressively. They print error messages but do not raise exceptions. This can be misleading because it may appear that an algorithm ran successfully even if it did not.

Specific examples are described in #21 (comment) with Omics Integrator 1 and #103 (comment) with DOMINO. DOMINO currently raises an error for all small inputs, so it is desirable to catch that specific error but not mask all errors.

[tristan-f-r]

I could add a second PR on top of #220 that can allow specifying some custom lambda to be passed through run_container, which can act as an error filtering intermediary. (EDIT: I did this in #275.)