Skip to content

Change the pass of NCBI BLAST #9

@kokitsuyuzaki

Description

@kokitsuyuzaki

Hi,

Your Dockerfile of LocTree3 in README.md may not work properly, because of change the pass of NCBI BLAST.

I changed the Dockerfile as follows and "docker build" ran successfully, though I don't know this make LocTree3 analyze real data properly.

FROM ubuntu:14.04
RUN apt-get -y update && apt-get install -y wget unzip automake make libconfig-inifiles-perl pp-popularity-contest
RUN wget -q https://github.com/Rostlab/LocTree3/archive/develop.zip && unzip -q develop.zip
RUN cd LocTree3-develop && aclocal && autoconf && autoheader; automake --add-missing && ./configure && make && make install
RUN wget -q ftp://ftp.ncbi.nlm.nih.gov/blast/executables//blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz && tar xf ncbi-blast-2.7.1+-x64-linux.tar.gz
RUN /bin/echo -e "[NCBI]\nData=/ncbi-blast-2.7.1+/data/" > ~/.ncbirc && /bin/echo -e "export PATH=$PATH:/ncbi-blast-2.7.1+/bin" >> ~/.bashrc

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions