#14 searching for indexed refseq

[marwaaswa]

-searching for indexed reference genome to decrease computational resources needed for indexing

• links :

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz

https://www.ncbi.nlm.nih.gov/projects/genome/guide/human/
(in readme analysis :

HISAT2 index files

GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.hisat2_index.tar.gz
GCA_000001405.15_GRCh38_full_analysis_set.fna.hisat2_index.tar.gz
GCA_000001405.15_GRCh38_full_plus_hs38d1_analysis_set.fna.hisat2_index.tar.gz
GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_analysis_set.fna.hisat2_index.tar.gz

tar archives containing HISAT2 index files for the analysis sets. The
HISAT2 index files were generated by running HISAT2 version 2.0.5
using the default parameters for the index command.

Annotation files

[marwaaswa]

https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=ALLFIELDS&DATA=&ORGANISM=9606&BUILDS=CURRENTBUILDS
ftp://ftp.ncbi.nlm.nih.gov/pub/CCDS/current_human