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Docker Installation

0. Install Docker if not already done

1. Update API Key for chatGPT

In the docker-compose.yml file:

  • Change the OPENAI_API_KEY if you are using OpenAI ChatGPT.

2. Access Local Hard Drive

For accessing your local hard drive for data, modify the volumes section:

  • From: 
    volumes: 
  device: /home/mamat/accplatform/article1-sanofi/data
  • To: 
    volumes:
  device: [location on your hard drive]

3. Build and Run Docker

docker compose build
docker compose up

4. (Optional) install a new Ollama model

Open your browser and use http://{docker_container_machine_ip}:3000/ to install a new model.

5. Access the app

Open your browser and use http://{docker_container_machine_ip}:8501/ with {docker_container_machine_ip} being localhost most of the time

"Enter the directory containing CSV files:": /home/streamlit/data/Kras

Manual Installation on Linux

requirements: python (and conda)

1. Configure Environment Variable

Set the OpenAI API key:

export OPENAI_API_KEY=enter_your_chatgpt_api_key_here

2. Install and Run Python Environment

Execute the following script to install and run the Python environment:

./install.sh

3. Install and Run Ollama on Linux

Follow the installation instructions for Ollama from https://ollama.com/.

To install a model, follow the instructions provided on the website.

If necessary, update the environment variable for Ollama:

export OLLAMA_API_BASE_URL=http://localhost:11434

4. Launch the Streamlit App

Activate the evocell environment and launch the app:

conda activate evocell
cd evocell/app
streamlit run main.py

Manual Installation on Windows

0. Install python, conda

1. Configure Environment Variable

To set the OpenAI API key, open a Command Prompt and run:

set OPENAI_API_KEY=enter_your_chatgpt_api_key_here

2. Install and Run Python Environment

Run the install.bat file to install dependencies:

install.bat

3. Install and Run Ollama on Windows

Follow the instructions for installing Ollama from https://ollama.com/.

After installation, update the environment variable if necessary:

set OLLAMA_API_BASE_URL=http://localhost:11434

4. Launch the Streamlit App

Activate the Python environment and run the Streamlit app:

conda activate evocell
cd evocell
streamlit run evocell_app.py

Manual Installation on macOS

0. Install python, conda

1. Configure Environment Variable

Set the OpenAI API key in the terminal:

export OPENAI_API_KEY=enter_your_chatgpt_api_key_here

2. Install and Run Python Environment

Run the install.sh script to install dependencies:

./install.sh

3. Install and Run Ollama on macOS

Follow the installation instructions for Ollama from https://ollama.com/.

After installation, if necessary, update the environment variable:

export OLLAMA_API_BASE_URL=http://localhost:11434

4. Launch the Streamlit App

Activate the Python environment and run the app:

conda activate evocell
cd evocell
streamlit run evocell_app.py