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Creation of a ReactionSystem from a reaction involving compounds and only_use_rate=true #1151
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So I have been able to reproduce this in some cases. However, with only Status `~/Desktop/Julia Playground/Environment - Temporary/Project.toml`
[479239e8] Catalyst v14.4.1 `~/.julia/dev/Catalyst`
[961ee093] ModelingToolkit v9.59.0 on the latest julia version (1.11.2) this works. Could you try |
Thanks indeed it works by simply changing the release version of Catalyst by the dev one. However I have now another issue with events. Is this a temporary problem due to the dev version? using ModelingToolkit: t_nounits as t, D_nounits as D
using Catalyst
@species C(t) O(t) H(t)
@compounds begin
O₂ ~ 2O
H₂O ~ 2H + O
CO₂ ~ C + 2O
CH₄ ~ C + 4H
end
@parameters k
rx = Reaction(k*CH₄*O₂, [CH₄, O₂], [CO₂, H₂O], [1, 2], [1, 2]; only_use_rate=true)
event_CO₂ = [CO₂ ~ 1.] => [CO₂ ~ 0.5]
@named RS = ReactionSystem([rx], t; combinatoric_ratelaws=false, continuous_events = [event_CO₂]) which outputs ERROR: ArgumentError: Variable CO₂ is not a function of independent variable t.
Stacktrace:
[1] check_variables(dvs::Vector{SymbolicUtils.BasicSymbolic}, iv::SymbolicUtils.BasicSymbolic{Real})
@ ModelingToolkit C:\Users\jf.barthelemy\.julia\packages\ModelingToolkit\klLLV\src\utils.jl:151
[2] ReactionSystem(eqs::Vector{…}, rxs::Vector{…}, iv::SymbolicUtils.BasicSymbolic{…}, sivs::Vector{…}, unknowns::Vector{…}, spcs::Vector{…}, ps::Vector{…}, var_to_name::Dict{…}, observed::Vector{…}, name::Symbol, systems::Vector{…}, defaults::Dict{…}, connection_type::Nothing, nps::Catalyst.NetworkProperties{…}, cls::Bool, cevs::Vector{…}, devs::Vector{…}, metadata::Nothing, complete::Bool, parent::Nothing; checks::Bool)
@ Catalyst C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:348
[3] ReactionSystem
@ C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:335 [inlined]
[4] ReactionSystem(eqs::Vector{…}, iv::SymbolicUtils.BasicSymbolic{…}, unknowns::Vector{…}, ps::Vector{…}; observed::Vector{…}, systems::Vector{…}, name::Symbol, default_u0::Dict{…}, default_p::Dict{…}, defaults::Dict{…}, connection_type::Nothing, checks::Bool, networkproperties::Nothing, combinatoric_ratelaws::Bool, balanced_bc_check::Bool, spatial_ivs::Nothing, continuous_events::Vector{…}, discrete_events::Vector{…}, metadata::Nothing)
@ Catalyst C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:466
[5] make_ReactionSystem_internal(rxs_and_eqs::Vector{…}, iv::Num, us_in::Vector{…}, ps_in::Vector{…}; spatial_ivs::Nothing, continuous_events::Vector{…}, discrete_events::Vector{…}, observed::Vector{…}, kwargs::@Kwargs{…})
@ Catalyst C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:564
[6] make_ReactionSystem_internal
@ C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:489 [inlined]
[7] #ReactionSystem#66
@ C:\Users\jf.barthelemy\.julia\dev\Catalyst\src\reactionsystem.jl:475 [inlined]
[8] top-level scope
@ C:\Users\jf.barthelemy\.julia\packages\ModelingToolkit\klLLV\src\systems\abstractsystem.jl:2060
Some type information was truncated. Use `show(err)` to see complete types. |
Can confirm this second one is a bug. Have gotten partially though where it is, think it should be straightforward to fix. |
I will continue looking tomorrow, but in summary for anyone who is interested, this is the core problem: using Catalyst
t = default_t()
@species C(t) O(t)
@compounds begin
CO ~ C + O
end
vars = []
ModelingToolkit.get_variables!(vars, C + 1)
vars # [C(t)]
vars = []
ModelingToolkit.get_variables!(vars, CO + 1)
vars # [CO, t] I.e. MTK's Another thing I found, which I thought was the problem (but isn't) is that compounds are not wrapped: CO |> typeof # SymbolicUtils.BasicSymbolic{Real}
C |> typeof # Num Fixing this doesn't;t actually solve the original problem (but should be fixed though). |
Does the |
That seems like a good guess, will have a look at it |
Fix is up here: #1154 Should be available in the next release (unclear when that drops though) |
@TorkelE this is fixed now right (on master), so we can close this? |
yes |
Hi, I've just updated my environment, still with dev version of Catalyst.jl and the bug mentioned above has reappeared. I mean that giving the error
Has something been changed on the master branch to come back to the bugged behavior? Thanks |
I tried using ModelingToolkit: t_nounits as t, D_nounits as D
using Catalyst
@species C(t) O(t) H(t)
@compounds begin
O₂ ~ 2O
H₂O ~ 2H + O
CO₂ ~ C + 2O
CH₄ ~ C + 4H
end
@parameters k
rx = Reaction(k*CH₄*O₂, [CH₄, O₂], [CO₂, H₂O], [1, 2], [1, 2]; only_use_rate=true)
event_CO₂ = [CO₂ ~ 1.] => [CO₂ ~ 0.5]
@named RS = ReactionSystem([rx], t; combinatoric_ratelaws=false, continuous_events = [event_CO₂]) on master and it works fine for me. Can you restart your REPL and check it is still happening, along with providing
|
Thanks for your reply. I have restarted the REPL and I still have the same error. Output of `using Pkg; Pkg.status()`Status `C:\Users\jf.barthelemy\VSCode_workspace\CementHydration\Project.toml`
[479239e8] Catalyst v14.4.1 `C:\Users\jf.barthelemy\.julia\dev\Catalyst`
[a93c6f00] DataFrames v1.7.0
[1130ab10] DiffEqParamEstim v2.2.0
[0c46a032] DifferentialEquations v7.16.0
[06fc5a27] DynamicQuantities v1.4.0
[f213a82b] HomotopyContinuation v2.13.0
[961ee093] ModelingToolkit v9.64.3
[7f7a1694] Optimization v4.1.1
[4e6fcdb7] OptimizationNLopt v0.3.2
[36348300] OptimizationOptimJL v0.4.1
[42dfb2eb] OptimizationOptimisers v0.3.7
[1dea7af3] OrdinaryDiffEq v6.91.0
[91a5bcdd] Plots v1.40.9
[1db272ca] PubChem v1.0.0
[1ed8b502] SciMLSensitivity v7.74.0
[53ae85a6] SciMLStructures v1.7.0
[9672c7b4] SteadyStateDiffEq v2.4.1
[2efcf032] SymbolicIndexingInterface v0.3.38
⌃ [e88e6eb3] Zygote v0.6.75
Info Packages marked with ⌃ have new versions available and may be upgradable. Output of `using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)`Status `C:\Users\jf.barthelemy\VSCode_workspace\CementHydration\Manifest.toml`
[47edcb42] ADTypes v1.13.0
[621f4979] AbstractFFTs v1.5.0
[398f06c4] AbstractLattices v0.3.1
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.42
[79e6a3ab] Adapt v4.2.0
[66dad0bd] AliasTables v1.1.3
[a95523ee] AlmostBlockDiagonals v0.1.10
[fb37089c] Arblib v1.2.1
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.18.0
[4c555306] ArrayLayouts v1.11.1
[a9b6321e] Atomix v1.1.1
[aae01518] BandedMatrices v1.9.2
[e2ed5e7c] Bijections v0.1.9
[d1d4a3ce] BitFlags v0.1.9
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[8e7c35d0] BlockArrays v1.4.0
[764a87c0] BoundaryValueDiffEq v5.16.0
[7227322d] BoundaryValueDiffEqAscher v1.5.0
[56b672f2] BoundaryValueDiffEqCore v1.8.0
[85d9eb09] BoundaryValueDiffEqFIRK v1.6.0
[1a22d4ce] BoundaryValueDiffEqMIRK v1.6.0
[9255f1d6] BoundaryValueDiffEqMIRKN v1.5.0
[ed55bfe0] BoundaryValueDiffEqShooting v1.6.0
[70df07ce] BracketingNonlinearSolve v1.1.0
[fa961155] CEnum v0.5.0
[2a0fbf3d] CPUSummary v0.2.6
[00ebfdb7] CSTParser v3.4.3
[49dc2e85] Calculus v0.5.2
[7057c7e9] Cassette v0.3.14
[479239e8] Catalyst v14.4.1 `C:\Users\jf.barthelemy\.julia\dev\Catalyst`
[082447d4] ChainRules v1.72.3
[d360d2e6] ChainRulesCore v1.25.1
[fb6a15b2] CloseOpenIntervals v0.1.13
[944b1d66] CodecZlib v0.7.8
[35d6a980] ColorSchemes v3.29.0
[3da002f7] ColorTypes v0.12.0
[c3611d14] ColorVectorSpace v0.11.0
[5ae59095] Colors v0.13.0
[861a8166] Combinatorics v1.0.2
[a80b9123] CommonMark v0.8.15
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.16.0
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
[f0e56b4a] ConcurrentUtilities v2.5.0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.5.8
[d38c429a] Contour v0.6.3
[adafc99b] CpuId v0.3.1
[a8cc5b0e] Crayons v4.1.1
[9a962f9c] DataAPI v1.16.0
[a93c6f00] DataFrames v1.7.0
[864edb3b] DataStructures v0.18.20
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.52.0
[8bb1440f] DelimitedFiles v1.9.1
[39dd38d3] Dierckx v0.5.4
[2b5f629d] DiffEqBase v6.164.2
[459566f4] DiffEqCallbacks v4.3.0
[77a26b50] DiffEqNoiseProcess v5.24.1
[1130ab10] DiffEqParamEstim v2.2.0
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[0c46a032] DifferentialEquations v7.16.0
[a0c0ee7d] DifferentiationInterface v0.6.42
[8d63f2c5] DispatchDoctor v0.4.19
[b4f34e82] Distances v0.10.12
[31c24e10] Distributions v0.25.117
[ffbed154] DocStringExtensions v0.9.3
[5b8099bc] DomainSets v0.7.15
[7c1d4256] DynamicPolynomials v0.6.1
[06fc5a27] DynamicQuantities v1.4.0
[fdbdab4c] ElasticArrays v1.2.12
[4e289a0a] EnumX v1.0.4
[7da242da] Enzyme v0.13.30
[f151be2c] EnzymeCore v0.8.8
[460bff9d] ExceptionUnwrapping v0.1.11
[d4d017d3] ExponentialUtilities v1.27.0
[e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
[55351af7] ExproniconLite v0.10.14
[c87230d0] FFMPEG v0.4.2
[9d29842c] FastAlmostBandedMatrices v0.1.4
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[442a2c76] FastGaussQuadrature v1.0.2
[a4df4552] FastPower v1.1.1
[1a297f60] FillArrays v1.13.0
[64ca27bc] FindFirstFunctions v1.4.1
[6a86dc24] FiniteDiff v2.27.0
[53c48c17] FixedPointNumbers v0.8.5
[1fa38f19] Format v1.3.7
[f6369f11] ForwardDiff v0.10.38
[f62d2435] FunctionProperties v0.1.2
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
[d9f16b24] Functors v0.5.2
[0c68f7d7] GPUArrays v11.2.2
[46192b85] GPUArraysCore v0.2.0
[61eb1bfa] GPUCompiler v1.2.0
[28b8d3ca] GR v0.73.13
[c145ed77] GenericSchur v0.5.4
[c27321d9] Glob v1.3.1
[86223c79] Graphs v1.12.0
[42e2da0e] Grisu v1.0.2
[cd3eb016] HTTP v1.10.15
[076d061b] HashArrayMappedTries v0.2.0
[f213a82b] HomotopyContinuation v2.13.0
[3e5b6fbb] HostCPUFeatures v0.1.17
[34004b35] HypergeometricFunctions v0.3.27
[7869d1d1] IRTools v0.4.14
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[842dd82b] InlineStrings v1.4.3
[18e54dd8] IntegerMathUtils v0.1.2
[8197267c] IntervalSets v0.7.10
[524e6230] IntervalTrees v1.1.0
[3587e190] InverseFunctions v0.1.17
[41ab1584] InvertedIndices v1.3.1
[92d709cd] IrrationalConstants v0.2.4
[c8e1da08] IterTools v1.10.0
[82899510] IteratorInterfaceExtensions v1.0.0
[1019f520] JLFzf v0.1.9
[692b3bcd] JLLWrappers v1.7.0
[682c06a0] JSON v0.21.4
[ae98c720] Jieko v0.2.1
[98e50ef6] JuliaFormatter v1.0.62
[ccbc3e58] JumpProcesses v9.14.2
[63c18a36] KernelAbstractions v0.9.34
[ba0b0d4f] Krylov v0.9.10
[5be7bae1] LBFGSB v0.4.1
[929cbde3] LLVM v9.2.0
[8ac3fa9e] LRUCache v1.6.1
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.6
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.6.1
[1d6d02ad] LeftChildRightSiblingTrees v0.2.0
[2d8b4e74] LevyArea v1.0.0
[9c8b4983] LightXML v0.9.1
[87fe0de2] LineSearch v0.1.4
[d3d80556] LineSearches v7.3.0
[9b3f67b0] LinearAlgebraX v0.2.10
[7ed4a6bd] LinearSolve v3.4.0
[2ab3a3ac] LogExpFunctions v0.3.29
[e6f89c97] LoggingExtras v1.1.0
[bdcacae8] LoopVectorization v0.12.171
[d8e11817] MLStyle v0.4.17
[1914dd2f] MacroTools v0.5.15
[d125e4d3] ManualMemory v0.1.8
[a3b82374] MatrixFactorizations v3.0.1
[bb5d69b7] MaybeInplace v0.1.4
[739be429] MbedTLS v1.1.9
[442fdcdd] Measures v0.3.2
[e1d29d7a] Missings v1.2.0
[291d046c] MixedSubdivisions v1.1.5
[961ee093] ModelingToolkit v9.64.3
[7475f97c] Mods v2.2.6
[2e0e35c7] Moshi v0.3.5
[46d2c3a1] MuladdMacro v0.2.4
[3b2b4ff1] Multisets v0.4.5
[102ac46a] MultivariatePolynomials v0.5.7
[d8a4904e] MutableArithmetics v1.6.4
[d41bc354] NLSolversBase v7.8.3
[76087f3c] NLopt v1.1.3
[2774e3e8] NLsolve v4.5.1
[872c559c] NNlib v0.9.28
[77ba4419] NaNMath v1.1.2
[8913a72c] NonlinearSolve v4.4.0
[be0214bd] NonlinearSolveBase v1.5.0
[5959db7a] NonlinearSolveFirstOrder v1.3.0
[9a2c21bd] NonlinearSolveQuasiNewton v1.2.0
[26075421] NonlinearSolveSpectralMethods v1.1.0
[d8793406] ObjectFile v0.4.3
[6fe1bfb0] OffsetArrays v1.15.0
[4d8831e6] OpenSSL v1.4.3
[429524aa] Optim v1.11.0
[3bd65402] Optimisers v0.4.5
[7f7a1694] Optimization v4.1.1
[bca83a33] OptimizationBase v2.4.0
[4e6fcdb7] OptimizationNLopt v0.3.2
[36348300] OptimizationOptimJL v0.4.1
[42dfb2eb] OptimizationOptimisers v0.3.7
[bac558e1] OrderedCollections v1.8.0
[1dea7af3] OrdinaryDiffEq v6.91.0
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0
[6ad6398a] OrdinaryDiffEqBDF v1.3.0
[bbf590c4] OrdinaryDiffEqCore v1.19.0
[50262376] OrdinaryDiffEqDefault v1.3.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.4.0
[9286f039] OrdinaryDiffEqExplicitRK v1.1.0
[e0540318] OrdinaryDiffEqExponentialRK v1.4.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.4.0
[5960d6e9] OrdinaryDiffEqFIRK v1.7.0
[101fe9f7] OrdinaryDiffEqFeagin v1.1.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0
[521117fe] OrdinaryDiffEqLinear v1.1.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0
[c9986a66] OrdinaryDiffEqNordsieck v1.1.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.0
[5b33eab2] OrdinaryDiffEqPRK v1.1.0
[04162be5] OrdinaryDiffEqQPRK v1.1.0
[af6ede74] OrdinaryDiffEqRKN v1.1.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.7.0
[2d112036] OrdinaryDiffEqSDIRK v1.3.0
[669c94d9] OrdinaryDiffEqSSPRK v1.2.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0
[b1df2697] OrdinaryDiffEqTsit5 v1.1.0
[79d7bb75] OrdinaryDiffEqVerner v1.1.1
[90014a1f] PDMats v0.11.32
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
[69de0a69] Parsers v2.8.1
[06bb1623] PenaltyFunctions v0.3.0
[2ae35dd2] Permutations v0.4.23
[b98c9c47] Pipe v1.3.0
[ccf2f8ad] PlotThemes v3.3.0
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[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.16
[1d0040c9] PolyesterWeave v0.2.2
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[01d81517] RecipesPipeline v0.6.12
[731186ca] RecursiveArrayTools v3.31.0
[189a3867] Reexport v1.2.2
[05181044] RelocatableFolders v1.0.1
[ae029012] Requires v1.3.1
[ae5879a3] ResettableStacks v1.1.1
[37e2e3b7] ReverseDiff v1.15.3
[286e9d63] RingLists v0.2.9
[79098fc4] Rmath v0.8.0
[7e49a35a] RuntimeGeneratedFunctions v0.5.13
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[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.43
[0bca4576] SciMLBase v2.75.1
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[c0aeaf25] SciMLOperators v0.3.12
[1ed8b502] SciMLSensitivity v7.74.0
[53ae85a6] SciMLStructures v1.7.0
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[91c51154] SentinelArrays v1.4.8
[efcf1570] Setfield v1.1.2
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[727e6d20] SimpleNonlinearSolve v2.1.0
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[cc47b68c] SimplePolynomials v0.2.18
[a6525b86] SimpleRandom v0.3.2
[699a6c99] SimpleTraits v0.9.4
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[a2af1166] SortingAlgorithms v1.2.1
[9f842d2f] SparseConnectivityTracer v0.6.13
[47a9eef4] SparseDiffTools v2.23.1
[dc90abb0] SparseInverseSubset v0.1.2
[0a514795] SparseMatrixColorings v0.4.13
[276daf66] SpecialFunctions v2.5.0
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[aedffcd0] Static v1.1.1
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[1e83bf80] StaticArraysCore v1.4.3
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.0
[2913bbd2] StatsBase v0.34.4
[4c63d2b9] StatsFuns v1.3.2
[9672c7b4] SteadyStateDiffEq v2.4.1
[789caeaf] StochasticDiffEq v6.74.0
[7792a7ef] StrideArraysCore v0.5.7
[892a3eda] StringManipulation v0.4.1
[09ab397b] StructArrays v0.7.0
[53d494c1] StructIO v0.3.1
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[0c5d862f] Symbolics v6.29.2
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
[62fd8b95] TensorCore v0.1.1
[8ea1fca8] TermInterface v2.0.0
[5d786b92] TerminalLoggers v0.1.7
[1c621080] TestItems v1.0.0
[8290d209] ThreadingUtilities v0.5.2
[a759f4b9] TimerOutputs v0.5.28
[0796e94c] Tokenize v0.5.29
[9f7883ad] Tracker v0.2.37
[3bb67fe8] TranscodingStreams v0.11.3
[a2a6695c] TreeViews v0.3.0
[410a4b4d] Tricks v0.1.10
[781d530d] TruncatedStacktraces v1.4.0
[5c2747f8] URIs v1.5.1
[3a884ed6] UnPack v1.0.2
[1cfade01] UnicodeFun v0.4.1
[1986cc42] Unitful v1.22.0
[45397f5d] UnitfulLatexify v1.6.4
[a7c27f48] Unityper v0.1.6
[013be700] UnsafeAtomics v0.3.0
[41fe7b60] Unzip v0.2.0
[3d5dd08c] VectorizationBase v0.21.71
[19fa3120] VertexSafeGraphs v0.2.0
[897b6980] WeakValueDicts v0.1.0
⌃ [e88e6eb3] Zygote v0.6.75
[700de1a5] ZygoteRules v0.2.7
[6e34b625] Bzip2_jll v1.0.9+0
[83423d85] Cairo_jll v1.18.2+1
[ee1fde0b] Dbus_jll v1.14.10+0
[cd4c43a9] Dierckx_jll v0.2.0+0
[7cc45869] Enzyme_jll v0.0.172+0
[2702e6a9] EpollShim_jll v0.0.20230411+1
[2e619515] Expat_jll v2.6.5+0
⌅ [b22a6f82] FFMPEG_jll v4.4.4+1
[e134572f] FLINT_jll v300.100.301+0
[a3f928ae] Fontconfig_jll v2.15.0+0
[d7e528f0] FreeType2_jll v2.13.3+1
[559328eb] FriBidi_jll v1.0.16+0
[0656b61e] GLFW_jll v3.4.0+2
[d2c73de3] GR_jll v0.73.13+0
[78b55507] Gettext_jll v0.21.0+0
[7746bdde] Glib_jll v2.82.4+0
[3b182d85] Graphite2_jll v1.3.14+1
[2e76f6c2] HarfBuzz_jll v8.5.0+0
[1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
[aacddb02] JpegTurbo_jll v3.1.1+0
[c1c5ebd0] LAME_jll v3.100.2+0
[88015f11] LERC_jll v4.0.1+0
[dad2f222] LLVMExtra_jll v0.0.35+0
[1d63c593] LLVMOpenMP_jll v18.1.7+0
[dd4b983a] LZO_jll v2.10.3+0
[81d17ec3] L_BFGS_B_jll v3.0.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+2
[d4300ac3] Libgcrypt_jll v1.11.0+0
[7e76a0d4] Libglvnd_jll v1.7.0+0
[7add5ba3] Libgpg_error_jll v1.51.1+0
[94ce4f54] Libiconv_jll v1.18.0+0
[4b2f31a3] Libmount_jll v2.40.3+0
[89763e89] Libtiff_jll v4.7.1+0
[38a345b3] Libuuid_jll v2.40.3+0
[856f044c] MKL_jll v2025.0.1+1
[2ce0c516] MPC_jll v1.3.1+0
[079eb43e] NLopt_jll v2.10.0+0
[e7412a2a] Ogg_jll v1.3.5+1
[656ef2d0] OpenBLAS32_jll v0.3.29+0
[458c3c95] OpenSSL_jll v3.0.16+0
[efe28fd5] OpenSpecFun_jll v0.5.6+0
[91d4177d] Opus_jll v1.3.3+0
[36c8627f] Pango_jll v1.56.1+0
⌅ [30392449] Pixman_jll v0.43.4+0
⌅ [c0090381] Qt6Base_jll v6.7.1+1
⌅ [629bc702] Qt6Declarative_jll v6.7.1+2
⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1
⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1
[f50d1b31] Rmath_jll v0.5.1+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
⌅ [3428059b] SymEngine_jll v0.9.0+1
[a44049a8] Vulkan_Loader_jll v1.3.243+0
[a2964d1f] Wayland_jll v1.21.0+2
[2381bf8a] Wayland_protocols_jll v1.36.0+0
[02c8fc9c] XML2_jll v2.13.6+1
[aed1982a] XSLT_jll v1.1.42+0
[ffd25f8a] XZ_jll v5.6.4+1
[f67eecfb] Xorg_libICE_jll v1.1.1+0
[c834827a] Xorg_libSM_jll v1.2.4+0
[4f6342f7] Xorg_libX11_jll v1.8.6+3
[0c0b7dd1] Xorg_libXau_jll v1.0.12+0
[935fb764] Xorg_libXcursor_jll v1.2.3+0
[a3789734] Xorg_libXdmcp_jll v1.1.5+0
[1082639a] Xorg_libXext_jll v1.3.6+3
[d091e8ba] Xorg_libXfixes_jll v6.0.0+0
[a51aa0fd] Xorg_libXi_jll v1.8.2+0
[d1454406] Xorg_libXinerama_jll v1.1.5+0
[ec84b674] Xorg_libXrandr_jll v1.5.4+0
[ea2f1a96] Xorg_libXrender_jll v0.9.11+1
[14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0
[c7cfdc94] Xorg_libxcb_jll v1.17.0+3
[cc61e674] Xorg_libxkbfile_jll v1.1.2+1
[e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
[12413925] Xorg_xcb_util_image_jll v0.4.0+1
[2def613f] Xorg_xcb_util_jll v0.4.0+1
[975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
[0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
[c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
[35661453] Xorg_xkbcomp_jll v1.4.6+1
[33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
[c5fb5394] Xorg_xtrans_jll v1.5.1+0
[3161d3a3] Zstd_jll v1.5.7+1
[35ca27e7] eudev_jll v3.2.9+0
[214eeab7] fzf_jll v0.56.3+0
[1a1c6b14] gperf_jll v3.1.1+1
[a4ae2306] libaom_jll v3.11.0+0
[0ac62f75] libass_jll v0.15.2+0
[1183f4f0] libdecor_jll v0.2.2+0
[2db6ffa8] libevdev_jll v1.11.0+0
[f638f0a6] libfdk_aac_jll v2.0.3+0
[36db933b] libinput_jll v1.18.0+0
[b53b4c65] libpng_jll v1.6.46+0
[f27f6e37] libvorbis_jll v1.3.7+2
[009596ad] mtdev_jll v1.1.6+0
[1317d2d5] oneTBB_jll v2022.0.0+0
⌅ [1270edf5] x264_jll v2021.5.5+0
⌅ [dfaa095f] x265_jll v3.5.0+0
[d8fb68d0] xkbcommon_jll v1.4.1+2
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[4af54fe1] LazyArtifacts v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.11.0
[de0858da] Printf v1.11.0
[3fa0cd96] REPL v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.11.0
[f489334b] StyledStrings v1.11.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[781609d7] GMP_jll v6.3.0+0
[deac9b47] LibCURL_jll v8.6.0+0
[e37daf67] LibGit2_jll v1.7.2+0
[29816b5a] LibSSH2_jll v1.11.0+1
[3a97d323] MPFR_jll v4.2.1+0
[c8ffd9c3] MbedTLS_jll v2.28.6+0
[14a3606d] MozillaCACerts_jll v2023.12.12
[4536629a] OpenBLAS_jll v0.3.27+1
[05823500] OpenLibm_jll v0.8.1+2
[efcefdf7] PCRE2_jll v10.42.0+1
[bea87d4a] SuiteSparse_jll v7.7.0+0
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.59.0+0
[3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
To see why use `status --outdated -m` Output of `versioninfo()`Julia Version 1.11.3
Commit d63adeda50 (2025-01-21 19:42 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 8 × 11th Gen Intel(R) Core(TM) i7-1195G7 @ 2.90GHz
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, tigerlake)
Threads: 1 default, 0 interactive, 1 GC (on 8 virtual cores)
Environment:
LD_LIBRARY_PATH = C:\MinGW\msys64\mingw\lib\gcc\x86_64-w64-mingw32\14.2.0;C:\MinGW\msys64\usr\local\lib;C:\MinGW\msys64\mingw\bin;C:\MinGW\msys64\mingw\lib;C:\MinGW\local\BOOST\stage\lib;C:\MinGW\local\BLITZ\lib;C:\MinGW\local\NLOPT\lib;C:\MinGW\local\PNL\lib;C:\MinGW\local\MUMPS\lib
JULIA_EDITOR = code
JULIA_NUM_THREADS = |
Catalyst master only supports MTK < 9.60 currently, so it seems you've somehow installed an incompatible MTK version. The initialization related changes that MTK introduced as of 9.60+ have broken lots and lots of stuff for us in the tests and we haven't been able to get them fixed yet. |
Ok I see. Thanks. |
But please let us know if you see issues using an earlier MTK version too (i.e. < 9.6). |
Sorry that should be < 9.60... |
Hi, I've just tried with MTK v9.59 and even 9.50 and it still gives the same error message on the minimal example. Could there be other libraries to downgrade? Output of `using Pkg; Pkg.status()`Status `C:\Users\jf.barthelemy\VSCode_workspace\CementHydration\Project.toml`
[479239e8] Catalyst v14.4.1 `C:\Users\jf.barthelemy\.julia\dev\Catalyst`
[a93c6f00] DataFrames v1.7.0
[0c46a032] DifferentialEquations v7.16.0
[06fc5a27] DynamicQuantities v1.4.0
⌃ [961ee093] ModelingToolkit v9.50.0
[7f7a1694] Optimization v4.1.1
[4e6fcdb7] OptimizationNLopt v0.3.2
[36348300] OptimizationOptimJL v0.4.1
[42dfb2eb] OptimizationOptimisers v0.3.7
[1dea7af3] OrdinaryDiffEq v6.92.0
[91a5bcdd] Plots v1.40.9
⌃ [1ed8b502] SciMLSensitivity v7.68.0
[53ae85a6] SciMLStructures v1.7.0
[9672c7b4] SteadyStateDiffEq v2.4.1
[2efcf032] SymbolicIndexingInterface v0.3.38
Info Packages marked with ⌃ have new versions available and may be upgradable. Output of `using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)`Status `C:\Users\jf.barthelemy\VSCode_workspace\CementHydration\Manifest.toml`
[47edcb42] ADTypes v1.14.0
[621f4979] AbstractFFTs v1.5.0
[1520ce14] AbstractTrees v0.4.5
[7d9f7c33] Accessors v0.1.42
[79e6a3ab] Adapt v4.2.0
[66dad0bd] AliasTables v1.1.3
[a95523ee] AlmostBlockDiagonals v0.1.10
[ec485272] ArnoldiMethod v0.4.0
[4fba245c] ArrayInterface v7.18.0
[4c555306] ArrayLayouts v1.11.1
[a9b6321e] Atomix v1.1.1
[aae01518] BandedMatrices v1.9.2
[e2ed5e7c] Bijections v0.1.9
[d1d4a3ce] BitFlags v0.1.9
[62783981] BitTwiddlingConvenienceFunctions v0.1.6
[8e7c35d0] BlockArrays v1.4.0
[764a87c0] BoundaryValueDiffEq v5.16.0
[7227322d] BoundaryValueDiffEqAscher v1.5.0
[56b672f2] BoundaryValueDiffEqCore v1.8.0
[85d9eb09] BoundaryValueDiffEqFIRK v1.6.0
[1a22d4ce] BoundaryValueDiffEqMIRK v1.6.0
[9255f1d6] BoundaryValueDiffEqMIRKN v1.5.0
[ed55bfe0] BoundaryValueDiffEqShooting v1.6.0
[fa961155] CEnum v0.5.0
[2a0fbf3d] CPUSummary v0.2.6
[00ebfdb7] CSTParser v3.4.3
[7057c7e9] Cassette v0.3.14
[479239e8] Catalyst v14.4.1 `C:\Users\jf.barthelemy\.julia\dev\Catalyst`
[082447d4] ChainRules v1.72.3
[d360d2e6] ChainRulesCore v1.25.1
[fb6a15b2] CloseOpenIntervals v0.1.13
[944b1d66] CodecZlib v0.7.8
[35d6a980] ColorSchemes v3.29.0
[3da002f7] ColorTypes v0.12.0
[c3611d14] ColorVectorSpace v0.11.0
[5ae59095] Colors v0.13.0
[861a8166] Combinatorics v1.0.2
⌅ [a80b9123] CommonMark v0.8.15
[38540f10] CommonSolve v0.2.4
[bbf7d656] CommonSubexpressions v0.3.1
[f70d9fcc] CommonWorldInvalidations v1.0.0
[34da2185] Compat v4.16.0
[b152e2b5] CompositeTypes v0.1.4
[a33af91c] CompositionsBase v0.1.2
[2569d6c7] ConcreteStructs v0.2.3
[f0e56b4a] ConcurrentUtilities v2.5.0
[88cd18e8] ConsoleProgressMonitor v0.1.2
[187b0558] ConstructionBase v1.5.8
[d38c429a] Contour v0.6.3
[adafc99b] CpuId v0.3.1
[a8cc5b0e] Crayons v4.1.1
[9a962f9c] DataAPI v1.16.0
[a93c6f00] DataFrames v1.7.0
[864edb3b] DataStructures v0.18.20
[e2d170a0] DataValueInterfaces v1.0.0
[bcd4f6db] DelayDiffEq v5.52.0
[8bb1440f] DelimitedFiles v1.9.1
[2b5f629d] DiffEqBase v6.164.2
⌅ [459566f4] DiffEqCallbacks v3.9.1
[77a26b50] DiffEqNoiseProcess v5.24.1
[163ba53b] DiffResults v1.1.0
[b552c78f] DiffRules v1.15.1
[0c46a032] DifferentialEquations v7.16.0
[a0c0ee7d] DifferentiationInterface v0.6.43
[8d63f2c5] DispatchDoctor v0.4.19
[b4f34e82] Distances v0.10.12
[31c24e10] Distributions v0.25.117
[ffbed154] DocStringExtensions v0.9.3
[5b8099bc] DomainSets v0.7.15
[7c1d4256] DynamicPolynomials v0.6.1
[06fc5a27] DynamicQuantities v1.4.0
[da5c29d0] EllipsisNotation v1.8.0
[4e289a0a] EnumX v1.0.4
[7da242da] Enzyme v0.13.30
[f151be2c] EnzymeCore v0.8.8
[460bff9d] ExceptionUnwrapping v0.1.11
[d4d017d3] ExponentialUtilities v1.27.0
[e2ba6199] ExprTools v0.1.10
⌅ [6b7a57c9] Expronicon v0.8.5
[55351af7] ExproniconLite v0.10.14
[c87230d0] FFMPEG v0.4.2
[9d29842c] FastAlmostBandedMatrices v0.1.4
[7034ab61] FastBroadcast v0.3.5
[9aa1b823] FastClosures v0.3.2
[442a2c76] FastGaussQuadrature v1.0.2
[29a986be] FastLapackInterface v2.0.4
[a4df4552] FastPower v1.1.1
[1a297f60] FillArrays v1.13.0
[64ca27bc] FindFirstFunctions v1.4.1
[6a86dc24] FiniteDiff v2.27.0
[53c48c17] FixedPointNumbers v0.8.5
[1fa38f19] Format v1.3.7
[f6369f11] ForwardDiff v0.10.38
[f62d2435] FunctionProperties v0.1.2
[069b7b12] FunctionWrappers v1.1.3
[77dc65aa] FunctionWrappersWrappers v0.1.3
⌅ [d9f16b24] Functors v0.4.12
⌃ [0c68f7d7] GPUArrays v10.3.1
⌅ [46192b85] GPUArraysCore v0.1.6
[61eb1bfa] GPUCompiler v1.2.0
[28b8d3ca] GR v0.73.13
[c145ed77] GenericSchur v0.5.4
[c27321d9] Glob v1.3.1
[86223c79] Graphs v1.12.0
[42e2da0e] Grisu v1.0.2
[cd3eb016] HTTP v1.10.15
[3e5b6fbb] HostCPUFeatures v0.1.17
[34004b35] HypergeometricFunctions v0.3.27
[7869d1d1] IRTools v0.4.14
[615f187c] IfElse v0.1.1
[d25df0c9] Inflate v0.1.5
[842dd82b] InlineStrings v1.4.3
[18e54dd8] IntegerMathUtils v0.1.2
[8197267c] IntervalSets v0.7.10
[3587e190] InverseFunctions v0.1.17
[41ab1584] InvertedIndices v1.3.1
[92d709cd] IrrationalConstants v0.2.4
[82899510] IteratorInterfaceExtensions v1.0.0
[1019f520] JLFzf v0.1.9
[692b3bcd] JLLWrappers v1.7.0
[682c06a0] JSON v0.21.4
[ae98c720] Jieko v0.2.1
[98e50ef6] JuliaFormatter v1.0.62
[ccbc3e58] JumpProcesses v9.14.2
[ef3ab10e] KLU v0.6.0
[63c18a36] KernelAbstractions v0.9.34
[ba0b0d4f] Krylov v0.9.10
[5be7bae1] LBFGSB v0.4.1
[929cbde3] LLVM v9.2.0
[b964fa9f] LaTeXStrings v1.4.0
[23fbe1c1] Latexify v0.16.6
[10f19ff3] LayoutPointers v0.1.17
[5078a376] LazyArrays v2.6.1
[1d6d02ad] LeftChildRightSiblingTrees v0.2.0
[2d8b4e74] LevyArea v1.0.0
[87fe0de2] LineSearch v0.1.4
[d3d80556] LineSearches v7.3.0
⌅ [7ed4a6bd] LinearSolve v2.39.0
[2ab3a3ac] LogExpFunctions v0.3.29
[e6f89c97] LoggingExtras v1.1.0
[bdcacae8] LoopVectorization v0.12.171
[d8e11817] MLStyle v0.4.17
[1914dd2f] MacroTools v0.5.15
[d125e4d3] ManualMemory v0.1.8
[a3b82374] MatrixFactorizations v3.0.1
[bb5d69b7] MaybeInplace v0.1.4
[739be429] MbedTLS v1.1.9
[442fdcdd] Measures v0.3.2
[e1d29d7a] Missings v1.2.0
⌃ [961ee093] ModelingToolkit v9.50.0
[2e0e35c7] Moshi v0.3.5
[46d2c3a1] MuladdMacro v0.2.4
[102ac46a] MultivariatePolynomials v0.5.7
[d8a4904e] MutableArithmetics v1.6.4
[d41bc354] NLSolversBase v7.8.3
[76087f3c] NLopt v1.1.3
[2774e3e8] NLsolve v4.5.1
[872c559c] NNlib v0.9.28
[77ba4419] NaNMath v1.1.2
⌅ [8913a72c] NonlinearSolve v3.15.1
[be0214bd] NonlinearSolveBase v1.5.0
[5959db7a] NonlinearSolveFirstOrder v1.3.0
[d8793406] ObjectFile v0.4.3
[6fe1bfb0] OffsetArrays v1.15.0
[4d8831e6] OpenSSL v1.4.3
[429524aa] Optim v1.11.0
[3bd65402] Optimisers v0.4.5
[7f7a1694] Optimization v4.1.1
[bca83a33] OptimizationBase v2.4.0
[4e6fcdb7] OptimizationNLopt v0.3.2
[36348300] OptimizationOptimJL v0.4.1
[42dfb2eb] OptimizationOptimisers v0.3.7
[bac558e1] OrderedCollections v1.8.0
[1dea7af3] OrdinaryDiffEq v6.92.0
[89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0
[6ad6398a] OrdinaryDiffEqBDF v1.3.0
[bbf590c4] OrdinaryDiffEqCore v1.19.0
[50262376] OrdinaryDiffEqDefault v1.3.0
[4302a76b] OrdinaryDiffEqDifferentiation v1.4.0
[9286f039] OrdinaryDiffEqExplicitRK v1.1.0
[e0540318] OrdinaryDiffEqExponentialRK v1.4.0
[becaefa8] OrdinaryDiffEqExtrapolation v1.5.0
[5960d6e9] OrdinaryDiffEqFIRK v1.8.0
[101fe9f7] OrdinaryDiffEqFeagin v1.1.0
[d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
[d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
[9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0
[521117fe] OrdinaryDiffEqLinear v1.1.0
[1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
[b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
[127b3ac7] OrdinaryDiffEqNonlinearSolve v1.5.0
[c9986a66] OrdinaryDiffEqNordsieck v1.1.0
[5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.0
[5b33eab2] OrdinaryDiffEqPRK v1.1.0
[04162be5] OrdinaryDiffEqQPRK v1.1.0
[af6ede74] OrdinaryDiffEqRKN v1.1.0
[43230ef6] OrdinaryDiffEqRosenbrock v1.7.0
[2d112036] OrdinaryDiffEqSDIRK v1.3.0
[669c94d9] OrdinaryDiffEqSSPRK v1.2.0
[e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0
[358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
[fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0
[b1df2697] OrdinaryDiffEqTsit5 v1.1.0
[79d7bb75] OrdinaryDiffEqVerner v1.1.1
[90014a1f] PDMats v0.11.32
[65ce6f38] PackageExtensionCompat v1.0.2
[d96e819e] Parameters v0.12.3
[69de0a69] Parsers v2.8.1
[b98c9c47] Pipe v1.3.0
[ccf2f8ad] PlotThemes v3.3.0
[995b91a9] PlotUtils v1.4.3
[91a5bcdd] Plots v1.40.9
[e409e4f3] PoissonRandom v0.4.4
[f517fe37] Polyester v0.7.16
[1d0040c9] PolyesterWeave v0.2.2
[2dfb63ee] PooledArrays v1.4.3
[85a6dd25] PositiveFactorizations v0.2.4
[d236fae5] PreallocationTools v0.4.25
[aea7be01] PrecompileTools v1.2.1
[21216c6a] Preferences v1.4.3
[08abe8d2] PrettyTables v2.4.0
[27ebfcd6] Primes v0.5.6
[33c8b6b6] ProgressLogging v0.1.4
[92933f4c] ProgressMeter v1.10.2
[43287f4e] PtrArrays v1.3.0
[1fd47b50] QuadGK v2.11.2
[74087812] Random123 v1.7.0
[e6cf234a] RandomNumbers v1.6.0
[c1ae055f] RealDot v0.1.0
[3cdcf5f2] RecipesBase v1.3.4
[01d81517] RecipesPipeline v0.6.12
[731186ca] RecursiveArrayTools v3.31.0
[f2c3362d] RecursiveFactorization v0.2.23
[189a3867] Reexport v1.2.2
[05181044] RelocatableFolders v1.0.1
[ae029012] Requires v1.3.1
[ae5879a3] ResettableStacks v1.1.1
[37e2e3b7] ReverseDiff v1.15.3
[79098fc4] Rmath v0.8.0
[7e49a35a] RuntimeGeneratedFunctions v0.5.13
[94e857df] SIMDTypes v0.1.0
[476501e8] SLEEFPirates v0.6.43
[0bca4576] SciMLBase v2.75.1
[19f34311] SciMLJacobianOperators v0.1.1
[c0aeaf25] SciMLOperators v0.3.12
⌃ [1ed8b502] SciMLSensitivity v7.68.0
[53ae85a6] SciMLStructures v1.7.0
[6c6a2e73] Scratch v1.2.1
[91c51154] SentinelArrays v1.4.8
[efcf1570] Setfield v1.1.2
[992d4aef] Showoff v1.0.3
[777ac1f9] SimpleBufferStream v1.2.0
⌅ [727e6d20] SimpleNonlinearSolve v1.12.3
[699a6c99] SimpleTraits v0.9.4
[ce78b400] SimpleUnPack v1.1.0
[a2af1166] SortingAlgorithms v1.2.1
[9f842d2f] SparseConnectivityTracer v0.6.13
[47a9eef4] SparseDiffTools v2.23.1
[dc90abb0] SparseInverseSubset v0.1.2
[0a514795] SparseMatrixColorings v0.4.14
[e56a9233] Sparspak v0.3.9
[276daf66] SpecialFunctions v2.5.0
[860ef19b] StableRNGs v1.0.2
[aedffcd0] Static v1.1.1
[0d7ed370] StaticArrayInterface v1.8.0
[90137ffa] StaticArrays v1.9.13
[1e83bf80] StaticArraysCore v1.4.3
[10745b16] Statistics v1.11.1
[82ae8749] StatsAPI v1.7.0
[2913bbd2] StatsBase v0.34.4
[4c63d2b9] StatsFuns v1.3.2
[9672c7b4] SteadyStateDiffEq v2.4.1
[789caeaf] StochasticDiffEq v6.74.0
[7792a7ef] StrideArraysCore v0.5.7
[892a3eda] StringManipulation v0.4.1
⌃ [09ab397b] StructArrays v0.6.18
[53d494c1] StructIO v0.3.1
[c3572dad] Sundials v4.26.1
[2efcf032] SymbolicIndexingInterface v0.3.38
[19f23fe9] SymbolicLimits v0.2.2
[d1185830] SymbolicUtils v3.17.0
[0c5d862f] Symbolics v6.30.0
[3783bdb8] TableTraits v1.0.1
[bd369af6] Tables v1.12.0
[ed4db957] TaskLocalValues v0.1.2
[62fd8b95] TensorCore v0.1.1
[8ea1fca8] TermInterface v2.0.0
[5d786b92] TerminalLoggers v0.1.7
[1c621080] TestItems v1.0.0
[8290d209] ThreadingUtilities v0.5.2
[a759f4b9] TimerOutputs v0.5.28
[0796e94c] Tokenize v0.5.29
[9f7883ad] Tracker v0.2.37
[3bb67fe8] TranscodingStreams v0.11.3
[d5829a12] TriangularSolve v0.2.1
[410a4b4d] Tricks v0.1.10
[781d530d] TruncatedStacktraces v1.4.0
[5c2747f8] URIs v1.5.1
[3a884ed6] UnPack v1.0.2
[1cfade01] UnicodeFun v0.4.1
[1986cc42] Unitful v1.22.0
[45397f5d] UnitfulLatexify v1.6.4
[a7c27f48] Unityper v0.1.6
[013be700] UnsafeAtomics v0.3.0
[41fe7b60] Unzip v0.2.0
[3d5dd08c] VectorizationBase v0.21.71
[19fa3120] VertexSafeGraphs v0.2.0
[897b6980] WeakValueDicts v0.1.0
⌅ [e88e6eb3] Zygote v0.6.75
[700de1a5] ZygoteRules v0.2.7
[6e34b625] Bzip2_jll v1.0.9+0
[83423d85] Cairo_jll v1.18.2+1
[ee1fde0b] Dbus_jll v1.14.10+0
[7cc45869] Enzyme_jll v0.0.172+0
[2702e6a9] EpollShim_jll v0.0.20230411+1
[2e619515] Expat_jll v2.6.5+0
⌅ [b22a6f82] FFMPEG_jll v4.4.4+1
[a3f928ae] Fontconfig_jll v2.15.0+0
[d7e528f0] FreeType2_jll v2.13.3+1
[559328eb] FriBidi_jll v1.0.16+0
[0656b61e] GLFW_jll v3.4.0+2
[d2c73de3] GR_jll v0.73.13+0
[78b55507] Gettext_jll v0.21.0+0
[7746bdde] Glib_jll v2.82.4+0
[3b182d85] Graphite2_jll v1.3.14+1
[2e76f6c2] HarfBuzz_jll v8.5.0+0
[1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
[aacddb02] JpegTurbo_jll v3.1.1+0
[c1c5ebd0] LAME_jll v3.100.2+0
[88015f11] LERC_jll v4.0.1+0
[dad2f222] LLVMExtra_jll v0.0.35+0
[1d63c593] LLVMOpenMP_jll v18.1.7+0
[dd4b983a] LZO_jll v2.10.3+0
[81d17ec3] L_BFGS_B_jll v3.0.1+0
⌅ [e9f186c6] Libffi_jll v3.2.2+2
[d4300ac3] Libgcrypt_jll v1.11.0+0
[7e76a0d4] Libglvnd_jll v1.7.0+0
[7add5ba3] Libgpg_error_jll v1.51.1+0
[94ce4f54] Libiconv_jll v1.18.0+0
[4b2f31a3] Libmount_jll v2.40.3+0
[89763e89] Libtiff_jll v4.7.1+0
[38a345b3] Libuuid_jll v2.40.3+0
[856f044c] MKL_jll v2025.0.1+1
[079eb43e] NLopt_jll v2.10.0+0
[e7412a2a] Ogg_jll v1.3.5+1
[458c3c95] OpenSSL_jll v3.0.16+0
[efe28fd5] OpenSpecFun_jll v0.5.6+0
[91d4177d] Opus_jll v1.3.3+0
[36c8627f] Pango_jll v1.56.1+0
⌅ [30392449] Pixman_jll v0.43.4+0
⌅ [c0090381] Qt6Base_jll v6.7.1+1
⌅ [629bc702] Qt6Declarative_jll v6.7.1+2
⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1
⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1
[f50d1b31] Rmath_jll v0.5.1+0
⌅ [fb77eaff] Sundials_jll v5.2.3+0
[a44049a8] Vulkan_Loader_jll v1.3.243+0
[a2964d1f] Wayland_jll v1.21.0+2
[2381bf8a] Wayland_protocols_jll v1.36.0+0
[02c8fc9c] XML2_jll v2.13.6+1
[aed1982a] XSLT_jll v1.1.42+0
[ffd25f8a] XZ_jll v5.6.4+1
[f67eecfb] Xorg_libICE_jll v1.1.1+0
[c834827a] Xorg_libSM_jll v1.2.4+0
[4f6342f7] Xorg_libX11_jll v1.8.6+3
[0c0b7dd1] Xorg_libXau_jll v1.0.12+0
[935fb764] Xorg_libXcursor_jll v1.2.3+0
[a3789734] Xorg_libXdmcp_jll v1.1.5+0
[1082639a] Xorg_libXext_jll v1.3.6+3
[d091e8ba] Xorg_libXfixes_jll v6.0.0+0
[a51aa0fd] Xorg_libXi_jll v1.8.2+0
[d1454406] Xorg_libXinerama_jll v1.1.5+0
[ec84b674] Xorg_libXrandr_jll v1.5.4+0
[ea2f1a96] Xorg_libXrender_jll v0.9.11+1
[14d82f49] Xorg_libpthread_stubs_jll v0.1.2+0
[c7cfdc94] Xorg_libxcb_jll v1.17.0+3
[cc61e674] Xorg_libxkbfile_jll v1.1.2+1
[e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
[12413925] Xorg_xcb_util_image_jll v0.4.0+1
[2def613f] Xorg_xcb_util_jll v0.4.0+1
[975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
[0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
[c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
[35661453] Xorg_xkbcomp_jll v1.4.6+1
[33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
[c5fb5394] Xorg_xtrans_jll v1.5.1+0
[3161d3a3] Zstd_jll v1.5.7+1
[35ca27e7] eudev_jll v3.2.9+0
[214eeab7] fzf_jll v0.56.3+0
[1a1c6b14] gperf_jll v3.1.1+1
[a4ae2306] libaom_jll v3.11.0+0
[0ac62f75] libass_jll v0.15.2+0
[1183f4f0] libdecor_jll v0.2.2+0
[2db6ffa8] libevdev_jll v1.11.0+0
[f638f0a6] libfdk_aac_jll v2.0.3+0
[36db933b] libinput_jll v1.18.0+0
[b53b4c65] libpng_jll v1.6.47+0
[f27f6e37] libvorbis_jll v1.3.7+2
[009596ad] mtdev_jll v1.1.6+0
[1317d2d5] oneTBB_jll v2022.0.0+0
⌅ [1270edf5] x264_jll v2021.5.5+0
⌅ [dfaa095f] x265_jll v3.5.0+0
[d8fb68d0] xkbcommon_jll v1.4.1+2
[0dad84c5] ArgTools v1.1.2
[56f22d72] Artifacts v1.11.0
[2a0f44e3] Base64 v1.11.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[f43a241f] Downloads v1.6.0
[7b1f6079] FileWatching v1.11.0
[9fa8497b] Future v1.11.0
[b77e0a4c] InteractiveUtils v1.11.0
[4af54fe1] LazyArtifacts v1.11.0
[b27032c2] LibCURL v0.6.4
[76f85450] LibGit2 v1.11.0
[8f399da3] Libdl v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[56ddb016] Logging v1.11.0
[d6f4376e] Markdown v1.11.0
[a63ad114] Mmap v1.11.0
[ca575930] NetworkOptions v1.2.0
[44cfe95a] Pkg v1.11.0
[de0858da] Printf v1.11.0
[3fa0cd96] REPL v1.11.0
[9a3f8284] Random v1.11.0
[ea8e919c] SHA v0.7.0
[9e88b42a] Serialization v1.11.0
[1a1011a3] SharedArrays v1.11.0
[6462fe0b] Sockets v1.11.0
[2f01184e] SparseArrays v1.11.0
[f489334b] StyledStrings v1.11.0
[4607b0f0] SuiteSparse
[fa267f1f] TOML v1.0.3
[a4e569a6] Tar v1.10.0
[8dfed614] Test v1.11.0
[cf7118a7] UUIDs v1.11.0
[4ec0a83e] Unicode v1.11.0
[e66e0078] CompilerSupportLibraries_jll v1.1.1+0
[deac9b47] LibCURL_jll v8.6.0+0
[e37daf67] LibGit2_jll v1.7.2+0
[29816b5a] LibSSH2_jll v1.11.0+1
[c8ffd9c3] MbedTLS_jll v2.28.6+0
[14a3606d] MozillaCACerts_jll v2023.12.12
[4536629a] OpenBLAS_jll v0.3.27+1
[05823500] OpenLibm_jll v0.8.1+2
[efcefdf7] PCRE2_jll v10.42.0+1
[bea87d4a] SuiteSparse_jll v7.7.0+0
[83775a58] Zlib_jll v1.2.13+1
[8e850b90] libblastrampoline_jll v5.11.0+0
[8e850ede] nghttp2_jll v1.59.0+0
[3f19e933] p7zip_jll v17.4.0+2
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Output of `versioninfo()`Julia Version 1.11.3
Commit d63adeda50 (2025-01-21 19:42 UTC)
Build Info:
Official https://julialang.org/ release
Platform Info:
OS: Windows (x86_64-w64-mingw32)
CPU: 8 × 11th Gen Intel(R) Core(TM) i7-1195G7 @ 2.90GHz
WORD_SIZE: 64
LLVM: libLLVM-16.0.6 (ORCJIT, tigerlake)
Threads: 1 default, 0 interactive, 1 GC (on 8 virtual cores)
Environment:
LD_LIBRARY_PATH = C:\MinGW\msys64\mingw\lib\gcc\x86_64-w64-mingw32\14.2.0;C:\MinGW\msys64\usr\local\lib;C:\MinGW\msys64\mingw\bin;C:\MinGW\msys64\mingw\lib;C:\MinGW\local\BOOST\stage\lib;C:\MinGW\local\BLITZ\lib;C:\MinGW\local\NLOPT\lib;C:\MinGW\local\PNL\lib;C:\MinGW\local\MUMPS\lib
JULIA_EDITOR = code
JULIA_NUM_THREADS = |
Have you checked that you are on the latest version of master? @TorkelE do you see this error? I can't reproduce. |
Well to be sure I have removed then reloaded the curent version using
Isn't this the last version? |
In: C:\Users\jf.barthelemy.julia\dev\Catalyst Run |
Thanks. Indeed it works with MTK v9.59. |
Awesome! So yeah, using |
I see. Thanks for the information. |
Hi,
After an update the following MRE doesn't work anymore whereas it worked in a set of previous versions of libraries (unfortunately I haven't kept the version numbers). Thank you very much for your help.
Minimal Reproducible Example 👇
Error & Stacktrace⚠️
Not Working Environment:
using Pkg; Pkg.status()
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Click to open
versioninfo()
The text was updated successfully, but these errors were encountered: