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VC3D: link fibers in two gestures (Fiber Map "Link A and B", in-dialog link from a fiber-intersection X) #1067
Workflow file for this run
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| name: Test vesuvius Python | |
| on: | |
| pull_request: | |
| paths: | |
| - 'vesuvius/**' | |
| - 'lasagna/**' | |
| # Local source dependencies installed by uv sync --extra all. | |
| - 'volume-cartographer/**' | |
| - 'segmentation/models/batchgeneratorsv2/**' | |
| - 'segmentation/models/arch/nnunet/**' | |
| - '.github/workflows/test-vesuvius.yml' | |
| jobs: | |
| test-vesuvius-python: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Limit the test matrix to ubuntu-latest for now, as other platforms may not | |
| # support all dependencies yet. Extend this list once the build scripts | |
| # for macOS and Windows are confirmed. | |
| os: [ubuntu-latest] | |
| zarr: ['2.18.7', '3.2.1'] | |
| defaults: | |
| run: | |
| shell: bash | |
| working-directory: ./vesuvius | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Install native build dependencies on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get update | |
| # Native dependency closure for volume-cartographer's Python-only | |
| # scikit-build configuration (apps, UI tracer, flatboi, tests: OFF). | |
| # qt6-base-dev: utils links Qt6::Core (SFTP remote access, #1941). | |
| sudo apt-get install -y --no-install-recommends \ | |
| build-essential \ | |
| curl \ | |
| git \ | |
| libblosc-dev \ | |
| libboost-dev \ | |
| libceres-dev \ | |
| libcurl4-openssl-dev \ | |
| libeigen3-dev \ | |
| liblz4-dev \ | |
| libopencv-contrib-dev \ | |
| libopencv-dev \ | |
| libsuitesparse-dev \ | |
| libtiff-dev \ | |
| libzstd-dev \ | |
| ninja-build \ | |
| nlohmann-json3-dev \ | |
| pkg-config \ | |
| qt6-base-dev \ | |
| zlib1g-dev | |
| - name: Install uv | |
| run: | | |
| curl -LsSf https://astral.sh/uv/install.sh | sh | |
| echo "$HOME/.local/bin" >> "$GITHUB_PATH" | |
| - name: Sync dependencies | |
| run: uv sync --extra all | |
| - name: Select Zarr version | |
| run: uv pip install "zarr==${{ matrix.zarr }}" | |
| - name: Run tests | |
| env: | |
| PYTHONPATH: ${{ github.workspace }} | |
| run: uv run --no-sync pytest tests -m "not slow and not network" |