use finish_font everywhere, update comments, remove old file that probably no longer works, update readme

Author: StephanieKemna

README.md

@@ -30,12 +30,13 @@ or use `map_data_from_ecomapper_by_type` / `plot_em_by_type` / `map_all` / `plot
 and change the data_prefix_path to the specific log file.
 (Haven't tested this in a while.. :) )
 
-## creating interpolated bathymetry plots, x: longitude, y: latitude, color: depth
+## creating interpolated data plots, x: longitude, y: latitude, color: depth
 To create an interpolated data plot, run
 `map_interpolated_data_from_ecomapper_by_type` using any data type, for example `water_depth`:
 ```
 map_interpolated_data_from_ecomapper_by_type('water_depth','~/data_em/puddingstone_20180419')
 ```
+To create an interpolated bathymetry plot, you can also use the shortcut of running the `map_bathymetry_from_ecomapper` script.
 
 ## non-interpolated top-down views
 Examples:

curtain_plot_by_type.m

@@ -10,10 +10,10 @@
 %
 function[] = curtain_plot_by_type(data_type, file_path, location, save_figs)
 
-if ( ~exist('save_figs','var') )
+if ~exist('save_figs','var')
   save_figs = 0;
 end
-if ( ~exist('location','var') )
+if ~exist('location','var')
   location = 'puddingstone';
 end
 
@@ -29,7 +29,7 @@
 run em_prepare_labels
 
 % Importing file into matlab cell
-if ( ~exist('file_path','var') )
+if ~exist('file_path','var')
   [filename, pathname] = uigetfile('*.log', 'Select the data file');
   file_path = strcat(pathname, filename);
 end
@@ -77,7 +77,7 @@
 end
 
 % Plot the completed 3D slice/graph
-hFig= figure;
+hFig = figure;
 set(hFig, 'Position', [0 0 1000 1000])
 three_dimensional_slice = surf(lon_copies, lat_copies, -depth_copies, grid_data_values);
 shading interp
@@ -146,18 +146,5 @@
   end
 end
 
-% % testing, trying to get map underneath
-% hold on;
-% if ( strcmp(location,'puddingstone') == 1 )
-%   mapfile = '~/Maps/puddingstone/puddingstone_dam_extended.tiff';
-% elseif ( strcmp(location,'elsinore') == 1 )
-%   mapfile='~/Maps/elsinore/elsinore17_crop.tiff';
-% else
-%   disp('Error, location unknown, exiting');
-%   return;
-% end
-% [data_array, ref_object] = geotiffread(mapfile);
-% geoshow(data_array,ref_object)
-
 end
 

finish_font.m

@@ -10,7 +10,7 @@
 function [] = finish_font(fsize)
 
 if nargin < 1
-    fsize = 26;
+  fsize = 16;
 end
 
 % make all text in the figure to size 

map_bathymetry_from_ecomapper.m

@@ -79,7 +79,6 @@
 end
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16)
-set(findall(gcf,'type','text'),'FontSize',16)
+finish_font
 
 end

map_data_from_ecomapper_by_type.m

@@ -121,8 +121,7 @@
 set(get(cb,'Title'),'String',type_title_string);
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16)
-set(findall(gcf,'type','text'),'FontSize',16)
+finish_font
 
 focus_map
 

map_data_from_ecomapper_by_type_and_date.m

@@ -103,8 +103,8 @@
 maxData = max(data(:,3));
 caxis([minData maxData]);
 set(get(cb,'Title'),'String',type_title_string);
+
 % make all text in the figure to size 16
-set(gca,'FontSize',16)
-set(findall(gcf,'type','text'),'FontSize',16)
+finish_font
 
 end

map_interpolated_data_from_ecomapper_by_type.m

@@ -115,8 +115,7 @@
 set(get(cb,'Title'),'String','Depth (m)');
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16)
-set(findall(gcf,'type','text'),'FontSize',16)
+finish_font
 
 %% other save methods
 

plot_em_by_type.m

@@ -120,8 +120,7 @@
 grid on
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16);
-set(findall(gcf,'type','text'),'FontSize',16);
+finish_font
 
 if ( save_figs )
   %% save file

plot_em_by_type_3d.m

@@ -118,8 +118,7 @@
 set(h,'interpreter','none')
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16);
-set(findall(gcf,'type','text'),'FontSize',16);
+finish_font
 
 % change viewing angle slightly to be a bit more based on Lon axis
 view([-30.0 25])

plot_em_type_date.m

@@ -98,8 +98,7 @@
   h = title(['EM ' data_type ' vs depth and time for: ' date_desired]);
   set(h,'interpreter','none')
 
-  set(gca,'FontSize',16);
-  set(findall(gcf,'type','text'),'FontSize',16);
+  finish_font
 
   %% save file
   disp(['Save figures for: ' data_type]);

plot_pitch_roll_from_pfd.m

@@ -42,7 +42,6 @@
 ylabel('latitude')
 
 % make all text in the figure to size 16
-set(gca,'FontSize',16);
-set(findall(gcf,'type','text'),'FontSize',16);
+finish_font
 
 end

plot_trajectory_single_mission.m

@@ -4,7 +4,7 @@
 % Institution: University of Southern California
 % Date: June 29, 2017
 %
-% tested with MatlabR2012a on Ubuntu 16.04
+% last tested with MatlabR2018a on Ubuntu 16.04
 %
 function [] = save_as_fig(fig_h, data_path_prefix, location, prefix, identifier, data_type)
 

save_as_fig.m

@@ -4,7 +4,7 @@
 % Institution: University of Southern California
 % Date: June 29, 2017
 %
-% tested with MatlabR2012a on Ubuntu 16.04
+% last tested with MatlabR2018a on Ubuntu 16.04
 %
 function [] = save_as_jpeg(data_path_prefix, location, prefix, identifier, data_type, resolution, postfix, paper_position)